LOCUS ADD43683.1 810 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 SMC domain protein protein. ACCESSION CP001778-3960 PROTEIN_ID ADD43683.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_4031" /inference="protein motif:PFAM:PF02463" /note="PFAM: SMC domain protein; KEGG: rme:Rmet_3664 exonuclease SbcC, putative" /transl_table=11 /db_xref="InterPro:IPR003395" BEGIN 1 MRPLRLDMEG FGTFSKPTTV DFTGADFFAL IGPTGAGKST VLDAICFALY GRVPRWGSGI 61 EYALAPSATS GKVRLVFSAD GACYVATRLV KRGGKGKVTT ASAALEKLPP DIDPSSLDNV 121 SELIGTALAA SAKAVGEQVE RIIGLPFDQF TKCVLLPQGA FAEFLHSSGA ERRKILENLL 181 GYSVYRDIQT AAGEEQKSAE AVLTRIEQEL SRVAPVTDEA IAAADARVRT LSAVGEKVRA 241 KVPRLDELTR RAAEAADALK TVDAEHALLT YIRRPDDVDA TVRQVAEAAA AVETARSAMT 301 EAEQAEERLR AEAADVDTAR IDLLLGKHAE LVDTDTKLAK GTTLTEDAEA ALAEAKSAQA 361 QRAEQVADAE RALDAARTAD LAAAVREHLE PGKPCPVCTQ TVRALPEHTG HATVATARQH 421 LDTAKAALKQ SEDEFVKLQG IAHKYRARVD QLLESRAALA EALADSPGPQ RLQADKEAAS 481 TRRAALAQAS ARVRETRDTV RRAETAHANA ADKQAIAWRT FDHHRDRVAA LAPPPADRGD 541 LDAAWRSLAD WAAEQLSLRA IQRGEHNAAV AKLDEETRIV RNELSVSLTE AGVNLGREAS 601 GTDFVEAAAV GLRQAEDDHR RLLEQRDIFV RLTADRAEKS REAQVAKQLH EHLGTRKFVN 661 WLLEEALREL VAGASDILRR LTSGQYDLDY IDYEFYVIDH HDADLPRPVK TLSGGETFAA 721 ALALALAMSE QLAGMSSQGA SLESILLDEG FGTLDAATLD QVAANLESLA TSGNRLVGVV 781 THVAGLAERI PVRFEVSKDA HGSHVERVEL //