LOCUS ACV55214.1 1165 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 UvrD/REP helicase protein. ACCESSION CP001726-1219 PROTEIN_ID ACV55214.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_1244" /inference="protein motif:PFAM:PF00580" /note="PFAM: UvrD/REP helicase; KEGG: afw:Anae109_1357 UvrD/REP helicase" /transl_table=11 /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" BEGIN 1 MNLSTCTPGQ RQSIEHVRGP LLVSAGAGSG KTFTLTQRIA YALLPESGPA ASGVDEVLAI 61 TFTEKAAAEI KARVKRTLRA EGLAEEALRV DGAWISTIHG MCARILRAHA LDLGLDPAFG 121 IMGDAERAEA VADAIDGALG DDNDIIARGS YAALFDEYPA RSTMPLAPSV ASMLQALMDK 181 AAGLRGGLDA LDFGPSPAQA STLARELLLA YEGVLPALER AGKSASAERA RAAAADAVEA 241 LGAFLADASA ASDARALAAV VDGCAYLPCT FGGADVKAEV KAYQAVHARV AQNVALALAH 301 PLASELMALA REVTARFEGA KRAACKLDND DLLVRTLDAF ERCPDIAARY ERRFKLVMVD 361 EFQDTSQLQI DMIARLAGPR CAHLCTVGDA QQSIYRFRGA DVNVYEAHKK AMRADEVGAL 421 YVELTKNFRS HGDVLSFVDR VFEQSTVFGE AFMSLEPNEQ RPSCYRGSAP RIDLVLSVQP 481 AGRGTGVRTA DAKRAGAEAI ARRFAALRED GHAPGDMVVL LGKMSRAGMY AEALRAEGFE 541 CVVTGGSLFA SAPEVRVVAR FVEALANPAN TAALFEVLTS DMMRLSADDL LVLTTEEDPE 601 TGCVRRRDLD RGFARLASRA DGLPPRLAHA VRLFERARDE SRTRPVATVV RDAVVRSGWM 661 ARLEEEGAAG TARAANVLKA VRLVDRLETE RHLGLASTAR ALADELAVGL KEAPGALSGA 721 GGDVVKIMTI HASKGLEFPV VALADFADAR AGSGKLLVET CGAIARASLA PAASLEAFPQ 781 LAKRSGAAAA GDGEDDADLL AARRLVEGED GPACALGASS CTQAAYRAQL ARRAADEELA 841 EARRKLYVGL TRASEALVVA MDAKAPSAGK PPAYAPLVDD IRSALCGDGD FPEGVAELPY 901 GGTAPARFER ILVQPPEPRA EEGVEPAPEP RLFFVPVVDD ASRSTLFAGG LARDDAFSYS 961 SIAPNPLPAP ADEGVPFAAD ADKATDLGSA FHRAAQLAVE TGRVPGAARL GVLSEAYALS 1021 TGQRARLADA CERWFSSATY AETLQWGLRR AEVPFFVPIS DAFVEGEIDL LCTDDAQLAG 1081 ARALVVDYKT GGSDGEAPEA LRSKHLLQAQ CYAYALLRQG CVEVELRFAR VEREDSAGGM 1141 QTVTYRFTAE DLDGLAVRIL SARRA //