LOCUS       ACU06227.1               679 aa    PRT              BCT 28-JAN-2014
DEFINITION  Pedobacter heparinus DSM 2366 excinuclease ABC, B subunit protein.
ACCESSION   CP001681-4001
PROTEIN_ID  ACU06227.1
SOURCE      Pedobacter heparinus DSM 2366
  ORGANISM  Pedobacter heparinus DSM 2366
            Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
            Sphingobacteriaceae; Pedobacter.
REFERENCE   1  (bases 1 to 5167383)
  AUTHORS   Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
            Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
            Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
            Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
            Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
            Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
            Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
  TITLE     Complete genome sequence of Pedobacter heparinus type strain (HIM
            762-3)
  JOURNAL   Stand Genomic Sci 1 (1), 54-62 (2009)
   PUBMED   21304637
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5167383)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
            Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
            Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The draft genome of Pedobacter heparinus DSM 2366
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 5167383)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
            Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
            Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
            Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4083041
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##Metadata-START##
            Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
            Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
                                     12017, NCIB 9290
            GOLD Stamp ID         :: Gc01041
            Funding Program       :: DOE-GEBA 2007
            Assembly Method       :: Phrap
            Sequencing Depth      :: 7.5x
            Gene Calling Method   :: Prodigal
            Isolation Site        :: Soil
            Oxygen Requirement    :: Aerobe
            Cell Shape            :: Rod-shaped
            Motility              :: Motile
            Sporulation           :: Nonsporulating
            Temperature Range     :: Mesophile
            Temperature Optimum   :: 25 - 30C
            pH                    :: 7
            Gram Staining         :: gram-
            Biotic Relationship   :: Free living
            Diseases              :: None
            Habitat               :: Soil
            Phenotypes            :: Chondroitinases producer, Heparinases
                                     producer
            Energy Source         :: Chemoorganotroph
            ##Metadata-END##
FEATURES             Qualifiers
     source          /organism="Pedobacter heparinus DSM 2366"
                     /mol_type="genomic DNA"
                     /strain="DSM 2366"
                     /type_material="type strain of Pedobacter heparinus"
                     /db_xref="taxon:485917"
     protein         /locus_tag="Phep_4036"
                     /note="PFAM: Type III restriction enzyme, res subunit;
                     Helicase conserved C-terminal domain; UvrB/uvrC motif;
                     TIGRFAM: excinuclease ABC, B subunit"
                     /transl_table=11
BEGIN
        1 MKFQIVSDYK PTGDQPAAIK QLVEGVNNED HYQTLLGVTG SGKTFTIANV IQQTQKPTLI
       61 LSHNKTLAAQ LYGEFKQFFP ENAVNYFVSY YDYYQPEAFI ASSNTYIEKD LSINEEIEKL
      121 RLRTTSALMS GRRDVIVVSS ISCIYGMGNP EDFSRSVFRF SVGLRISRNS FLHSLVEILY
      181 ARTTTDFKRG TFRVKGDTVD IFPAYLDNAY RVSFFGDDIE ALSVIDPVTG KTLEKLEDMA
      241 IYPANLFVTP KERFNSSIWG IQEELEIRKN QLIGDRHLLE AKRLEERVNF DIEMMKELGY
      301 CSGIENYSRF FDGRAPGMRP FCLLDYFPDD YLMVIDESHV TVPQIRAMYG GDRSRKMSLV
      361 EYGFRLPSAL DNRPLNFDEF ERLAPQTIYV SATPADYELQ KSEGIVIEQV IRPTGLLDPL
      421 IDVRPAVNQV DDLLDEIDKT IKLGDRVLVT TLTKRMAEEL TKYMDRLNIK CRYIHSEVKT
      481 LERVEILRGL RLGEFDVLIG INLLREGLDL PEVSLVAILD ADKEGFLRSD RALIQTIGRA
      541 ARNDRGRVIM YADNMTDSME RTIEETNRRR EKQVAYNLEH GIVPKTVGKS REAIMEQSSV
      601 LDFSSGERKR AKPYVEVDEV SIAADPVVQY MTKPEMQKSI DKTRKEMAKA AKDMDFLLAA
      661 RLRDEMFAME KLFEEKFSK
//