LOCUS ACU02819.1 704 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 translation elongation factor G protein. ACCESSION CP001681-593 PROTEIN_ID ACU02819.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0597" /note="PFAM: Elongation factor Tu GTP binding domain; Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor G, domain IV; TIGRFAM: small GTP-binding protein domain; translation elongation factor EF-G" /transl_table=11 BEGIN 1 MSRDLRFTRN IGIAAHIDAG KTTTTERILY YAGVNHKIGE VHEGASTMDW MVQEAERGIT 61 ITSAATTVGW KYRGQDYHIN IIDTPGHVDF TVEVNRSLRV LDGLVFLFSA VDGVEPQSET 121 NWRLANNYNV ARIGFVNKMD RSGADFLKVV GQVKSMLGSN AVPLQLPIGA EDSFKGVVDL 181 INNRGIVWNE HDKGMTFTEV PIPEDMLDEV AEWREKLLES VAEYDESLME KFFDAPETIT 241 EREVLDALRQ AVLDAKIVPM VCGSSFKNKG VQTMLDYVME LLPSPMDQEG IVGTNPNNGE 301 EVLRKPDEKE PFAALAFKIA TDPFVGRLCF IRVYSGNLEA GSYVYNARSE NKERISRIFQ 361 MHANKQNPIP NVGAGDIAAV VGFKDIKTGD TLCDEKNPII LESMNFPDPV IGLAIEPKTQ 421 ADVDKLGIAL GKLAEEDPTF KVQTDEETGQ TVISGMGELH LDILIDRLKR EFKVEVNQGA 481 PQVAYKEAIT GTTQHRETYK KQTGGRGKFA DIQVIISPID ADYEKGGLQF VNEIVGGSIP 541 REFIPSVEKG FAAAMSNGVV AGYPLPDMKV RLIDGSFHAV DSDALSFEIA ARSAFREALP 601 KCKPVLMEPI MKIEVLTPEE NMGDVMGDLN RRRGQLQGMD TRNGAQVIKA LVPLSEMFGY 661 VTQLRTITSG RATSTMEFDH YEPAPKNVQE EVIAKSKGKV KSLD //