LOCUS ACU02284.1 1185 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 TonB-dependent receptor protein. ACCESSION CP001681-58 PROTEIN_ID ACU02284.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0058" /note="PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain" /transl_table=11 BEGIN 1 MKKTITCLIK AFCLVLSVLY LNQAHAQVNK AMPVAEALKK ITEKYQTKFV YEPAVLRGKT 61 TTAALEKTNG QSIEEVLKGI LYPNNLLFLY VSDNHYAIIN KDEKSFQNAA GITLGTAVRG 121 IIKGNVTDEN GLPLPGVNIT VKDKTSRASS DNSGNYVIAA DREDLLLFTF VGYQVAELSP 181 NSGGILNVNM KPDVSQLKDV EVVSTGYQRI SRERSAGSFA KPDLDIMNSR SSSMNIAQRL 241 DGLVPGLTVN NAPGTETLLI RGLTSINATA SPLFVVDGIV LDGANVNSIN PNDVADITVL 301 KDATAASIWG SNAANGVIVI TTKKGSNTGR IRIDYDGFVN FQGRPETDYL PALNSSQFIQ 361 AARDIFDPVL NTYASVTKFS PTTWKPVPAH EELLYKLADK TLSPQQVAAY EQQLTDLANT 421 SNQKQINELL YRNALLTNHT LSLSGGTEKY NFYGSAAYTG TLNSSPGASN NTYKINLRQD 481 FKFSDRIQLY LITDLTNTTA QAKRNIRPNN MFLPYALFQD QNGSNISMPW LYLPDADRAT 541 FESKSLIDLN YSPLDEINRG YNNSNSMLAR INTGLDVNLI KGLKFQGVYG LVKGNTKTRS 601 YDGDDSFTFR RELAQFTVAA VAPATKPTYY LPETGAIYEV TNNLQENWNV RNQLVFDHSF 661 DNQKHQITAL FGQEIRKTFN TGNGSIVRGY DEQLLTSGQV DYKMLAVTGV TGVLPRGSGA 721 NKLDIRNFSA NEADVRFLSY YANLGYTFNN RYTLNGSWRI DESNLFGKDQ SAQNRPVWSV 781 GAGWLLSNEG FMDQVKWVDR LNLRSTYGIT GNAPIPGSAA SYDIFAAQAN AIFPGGKGLV 841 LSTPGNQSLS WESTKTLNFG LDFSILKRLN GSVDVYSKKT ENLIGELQVN PFTGFATIEG 901 NQGALKNRGV ELNLSSLNIN TRDFSWRTLL TLGYNKNEVT DLYSKTAITT GSGKVEQRFI 961 KGYSAYAVFA YQYAGLDNTG APQVRLNDGT VSTAKNVATP DDIVYMGSFQ PKWAGGFSNS 1021 LKYRDFGLQF NAVYNLGFVM RRDVNRFYSG GRLVPDVGSF TTGNVHSDFA NRWKASGDEA 1081 FTDIPAYVGS KTDTRELNYY YLADKNVVDA SYIKLRDITL AYQLPKALLN SIRAESISFR 1141 FQVSNILLWK ANDYGIDPEF QSAASGTRNM PANQKTFTLG AHVTF //