LOCUS ACU02232.1 1102 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 conserved hypothetical protein protein. ACCESSION CP001681-6 PROTEIN_ID ACU02232.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_0006" /transl_table=11 BEGIN 1 MSSNYELLIS KINEFTQKFY LNKLLRGSIY TAALLLALYL VLFVLIYYTQ PGTATKTALF 61 FGYIALGLLA IVLLVISPAL SYFKLGKNLS IEQASALIGD HFFNVKDKLL NTLQLKAMAE 121 KSPGNSQLIL AGIDQKISEL KPIPFSSAIK LADNKKYIKY FLAPASLILL IAIIAPAILR 181 EGTSSFVQYN KEILPKAPFN FVLLNSGLRV AQGDDVKLQL KLTGDEIPQE VYVSDGTNTY 241 KLEKESTTRF SYTFKNIQKS QKISFMAGGF NSAAFAIEVK PRPSILALTA RLLYPAYLNK 301 KPESIKNAGD LLLPEGTNVT WTMETQHSDQ LTFTLGNKSQ VLKAINNSFS YTGTIRENST 361 YRIVPRNNFV VSKDSLTHQL NVIKDEFPAI SVTETPDSLS SKALYFSGKI NDDHGFTSLK 421 FKYSIREGDK IKSTVSSLVP FKNGRQDFAF FYFWDLKTIA VKPDQRMEYY FEVADNDGVN 481 GPKTTKSEIK VFTPPSSQQV AEKINESSQV LKQKMGKAIK LAAQIEKESK KLGEILLDKK 541 QLTYEDKKQV EQLLDKQKQL EEAVKEINSL NKKNTFEKEE NNILKQELAE KQKQIDDLFN 601 HVLDEKTKTL LEKLQRLMDQ NNKDQTQNEL SKMQLDNKSL KNELDRILEL YKQLEFEQTL 661 QQTTDRLKEL AKAQKEQADK SLAKDAGLNE LKNKQQQLSE SFNDLKKEMK KLDEKNQQLE 721 RPNPFQNPEK ETKDIEQQQK GAEVQLDKND RKKAAEQQQK AADQMEQLAL KMSEMQQESA 781 EMENNLNAKE LRQLLENLLK TSFDQEKVML NLRRLNSNDS QYTSNVQQQR LIRDNMKTIG 841 DSLFSLSKRV PQIETAVNEE LQKINFNMDK GLENLGERNT AAANKNQQYA MTSINNLSLM 901 LNEALDQLQK SKAGKGAGKG KKQSLGQLQK MQQQLNDNMQ KAREQMQKGG NKGNVPKGAM 961 SEEFAKMAQQ QQMIREALQK INSEENKDGK GKLGNLNKTI EDMKATETEL VNKLLEQETL 1021 NRQKEVLTKL LEAENADREQ DEDAKRESKA GKDLPPSYRQ MLEKFKTLQK SETEWLQKMP 1081 PSLNHYYKNK IAEYFKLLNS GQ //