LOCUS       ABU71913.1               676 aa    PRT              BCT 25-AUG-2017
DEFINITION  Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION   CP000789-2852
PROTEIN_ID  ABU71913.1
SOURCE      Vibrio campbellii ATCC BAA-1116
  ORGANISM  Vibrio campbellii ATCC BAA-1116
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3765351)
  AUTHORS   Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
            Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
            Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
            Tu,K.C., Irgon,J. and Wilson,R.K.
  CONSRTM   The Vibrio harveyi Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
            Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT     Vibrio harveyi belongs to the group of bioluminescent bacteria that
            'glow in the dark,' just as the commonly known firefly. Based on
            their 16S  ribosomal RNA (rRNA) classification, they belong to the
            group of bacteria known as Proteobacteria, which is further
            sub-divided into five groups, including the gamma proteobacteria.
            This group includes many families, one of which is the Vibrionaceae
            (bioluminescent bacteria). One of the Vibrios is a human pathogen
            and causes cholera. Vibrio harveyi can be found globally in marine
            environments, either in a free-living state or in symbiosis with
            marine life.  The sequenced strain is BB120, ATCC BAA-1116
            http://www.atcc.org/common/catalog/numSearch/numResults.cfm
            Sequence/Assembly
            The genome of Vibrio harveyi was sequenced to 8X coverage using a
            combination of plasmid and fosmid end sequences. Additional 454
            sequence reads bring the present coverage to 10.8X. Assembly was
            performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
            The genome has  undergone automated sequence improvement
            (pre-finishing) followed by  manual finishing, and automated
            annotation. The National Science  Foundation (NSF) is providing
            funding for the complete sequence of the  Vibrio harveyi genome.
            
            Annotation
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. RNA genes were determined
            using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
            the contig level and may not necessarily reflect any known order or
            orientation between contigs.For questions regarding this assembly
            or project, please visit the Vibrio harveyi genome page
            (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
            choose the designated contact person.
FEATURES             Qualifiers
     source          /organism="Vibrio campbellii ATCC BAA-1116"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-1116; BB120"
                     /db_xref="ATCC:BAA-1116"
                     /db_xref="taxon:2902295"
                     /chromosome="I"
     protein         /locus_tag="VIBHAR_02961"
                     /inference="protein motif:HMMPfam:IPR001650"
                     /inference="protein motif:HMMPfam:IPR001943"
                     /inference="protein motif:HMMPfam:IPR006935"
                     /inference="protein motif:HMMSmart:IPR001650"
                     /inference="protein motif:HMMSmart:IPR014001"
                     /inference="protein motif:HMMTigr:IPR004807"
                     /inference="protein motif:superfamily:IPR009055"
                     /note="KEGG: hpa:HPAG1_1053 2.1e-177 excinuclease ABC
                     subunit B; COG: COG0556 Helicase subunit of the DNA
                     excision repair complex; Psort location: Cytoplasmic,
                     score:8.96"
                     /transl_table=11
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR004807"
                     /db_xref="InterPro:IPR006935"
                     /db_xref="InterPro:IPR009055"
                     /db_xref="InterPro:IPR014001"
BEGIN
        1 MSKVYELVSE YQPSGDQPTA IKQLLEGLDA GLAHQTLLGV TGSGKTFTLA NVIAEAQRPA
       61 ILLAPNKTLA AQLYGEMKAF FPNNAVEYFV SYYDYYQPEA YVPTTDTFIE KDASVNAHIE
      121 QMRLSATKAL LERKDAIIVA SVSAIYGLGD PESYLQMMLH LRRGDVIDQR DMLRRLAELQ
      181 YSRNDVAFER GQFRVRGEVI DIFPAESDQD AVRVEMFDDE VDCISVFDPL TGVVKQRDLP
      241 RYTIYPKTHY VTPRERILDA IESIKDELEV RKKQLLDNNK LLEEQRISQR TQFDIEMMNE
      301 LGFCSGIENY SRYLSGRAEG EPPPTLFDYL PHDGLLIIDE SHVTVPQIGA MYKGDRSRKE
      361 TLVEFGFRLP SALDNRPMKF EEFEAISPQT IFVSATPGNY ELEKSADEIA DQVVRPTGLL
      421 DPELEVRPVA TQVDDLLSEI RIRAAQDERV LVTTLTKRMA EDLTEYLHEH DVKVRYLHSD
      481 IDTVERVEII RDLRLGEFDV LVGINLLREG LDMPEVSLVA ILDADKEGFL RSERSLIQTI
      541 GRAARNIKGK AILYADSITK SMKKAMDETD RRREKQKAYN AEMGIEPQAL KRNIKDIMEL
      601 GDITKSKRQR NTKQVPLSKV AEPSQTYEIM SPQQLEKEIS RLEAAMYQHA QDLEFELAAQ
      661 KRDEIEKLRA QFIANS
//