LOCUS       ABU69299.1               281 aa    PRT              BCT 25-AUG-2017
DEFINITION  Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION   CP000789-238
PROTEIN_ID  ABU69299.1
SOURCE      Vibrio campbellii ATCC BAA-1116
  ORGANISM  Vibrio campbellii ATCC BAA-1116
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3765351)
  AUTHORS   Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
            Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
            Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
            Tu,K.C., Irgon,J. and Wilson,R.K.
  CONSRTM   The Vibrio harveyi Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
            Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT     Vibrio harveyi belongs to the group of bioluminescent bacteria that
            'glow in the dark,' just as the commonly known firefly. Based on
            their 16S  ribosomal RNA (rRNA) classification, they belong to the
            group of bacteria known as Proteobacteria, which is further
            sub-divided into five groups, including the gamma proteobacteria.
            This group includes many families, one of which is the Vibrionaceae
            (bioluminescent bacteria). One of the Vibrios is a human pathogen
            and causes cholera. Vibrio harveyi can be found globally in marine
            environments, either in a free-living state or in symbiosis with
            marine life.  The sequenced strain is BB120, ATCC BAA-1116
            http://www.atcc.org/common/catalog/numSearch/numResults.cfm
            Sequence/Assembly
            The genome of Vibrio harveyi was sequenced to 8X coverage using a
            combination of plasmid and fosmid end sequences. Additional 454
            sequence reads bring the present coverage to 10.8X. Assembly was
            performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
            The genome has  undergone automated sequence improvement
            (pre-finishing) followed by  manual finishing, and automated
            annotation. The National Science  Foundation (NSF) is providing
            funding for the complete sequence of the  Vibrio harveyi genome.
            
            Annotation
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. RNA genes were determined
            using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
            the contig level and may not necessarily reflect any known order or
            orientation between contigs.For questions regarding this assembly
            or project, please visit the Vibrio harveyi genome page
            (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
            choose the designated contact person.
FEATURES             Qualifiers
     source          /organism="Vibrio campbellii ATCC BAA-1116"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-1116; BB120"
                     /db_xref="ATCC:BAA-1116"
                     /db_xref="taxon:2902295"
                     /chromosome="I"
     protein         /locus_tag="VIBHAR_00271"
                     /inference="protein motif:HMMPfam:IPR000477"
                     /inference="similar to AA sequence:REFSEQ:ZP_01169814.1"
                     /note="KEGG: pol:Bpro_5394 1.8e-68 RNA-directed DNA
                     polymerase K00986; COG: COG3344 Retron-type reverse
                     transcriptase; Psort location: Cytoplasmic, score:8.96"
                     /transl_table=11
                     /db_xref="InterPro:IPR000477"
BEGIN
        1 MEQICSSTNL NQALRRVKKN KGCAGVDKLD IDATIFKLRQ ASNGQALRQS LLDGSYRPQP
       61 VLGVGIPKPS GGVRQLGIPT VLDRIVQQAI TSVLSDIYEA KFSNSSYGFR PNRSAHHALA
      121 AASRYIREGR GYVVDIDLAK YFDTVNHDRL MHRLSEDIAD KRVLKLIRSY LQAGIMRNGL
      181 VEQRQRGTPQ GGPLSPLLSN IVLDELDKEL ERRGHKFCRY ADDCQIYVGS EEAAYRVKES
      241 ITEYLEQKLK LTVNREKSAA TRVTERTYLS HRFGIDGTIH I
//