LOCUS ABO49533.1 2558 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 YD repeat protein protein. ACCESSION CP000612-981 PROTEIN_ID ABO49533.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_0998" /note="TIGRFAM: YD repeat protein; PFAM: Salmonella virulence plasmid 65kDa B protein; YD repeat-containing protein; KEGG: reh:H16_B1352 insecticidal toxin complex protein" /transl_table=11 /db_xref="InterPro:IPR002345" /db_xref="InterPro:IPR003284" /db_xref="InterPro:IPR006530" BEGIN 1 MGNKIKSFTN QKDKSKISFT ELSLPKGGGA IKGIGETFQP DPFSGTANLS IPVQMSPCRD 61 FEPKISLNYN SGTGNGIFGI GFSISIPNIS RKTEKGIPRY NDTDTFLFSN AEDLVSKMVK 121 NQEGSWVKEE RHVEENRVGW KVLSYIPRIE GLFAQIEYWQ NSWESFWKVT TKDNTTSIYG 181 QSENARIADP HDNTRVFKWL IEKTYDAKGN KIEYFYKQED NENAPDNICE KNRTYATNKY 241 VSSIKYGNYL DGKGEEAWAF EVVFDYGQYD ISDQYLSQPG CNPYIPARKW PARQDPFSSY 301 RSGFEIRTLR LCRNILMFHH FKKELGETPC LVKATQLTYR EPAQQLQNSN NPFTKILQLS 361 QVELKGFKRK ENGSYQFRSM PSLKLTYSCL MPAGGKFDTL KVGNSTAVPV STGQIRYNFV 421 DLYGDGIPGL LYSDDKATLY WKPKGNGEYE YPEPAAQFPI EKDLKKGEYT LVSLEGNGRL 481 DLVVGTPQRG GFYEGNPDGS WHSYRDFATY PLDFTNSHKE MIDMNGDGLA DLLLYEDNTA 541 KIYPSLKKKG YGIPTRASLS EDYPTTSNGY AEEVLSYADM FGDGMAHRVR IRNGSVECWP 601 NLGHGRFGKR VLFANAPRFG DTLDASRLFL ADLDGTGMTD LIYAYPDKVQ VFFNQGGNSF 661 SPPLSIPLPE TYSNLDQLGF ADVKGNGTAC LVFIKTGANA KQYYYDFSEG TKPYLLTGID 721 NNLGALTNIK YTSSVKYYLH DKMAGKPWKT KLPFPVQVVE KVESIDKISG LKLTTQYKYH 781 DGFYDSVERE FRGFGFVEET DSEDFFTYAK PGLLENVAFY GLEEEHHVPP VLTKRWYHIG 841 ACIEEGVVSK QCEKEYYQQD KRGFSIPDST FDDVVRQGCA ETLRQAYRAL KGQVIREEVY 901 ALDYIEGRTG HPYTVTETNF HVRLIQPLIG ENRAVFSVYK KETVSFNYER NPNDPQIQHE 961 FILAVDDFGN VKKSCRVFYP RRATPKDAVS VVHPEQTKIK AIVDLHSFIN NSLDFWLLGI 1021 SYESKTLEIG ALDLQGQACF SFTKIKDQVG RALQNCIRND EKFSSDKVQA RLLSWERNYF 1081 WNEAQDAPLP LGQITDKALL HHSEEAVFSQ ELLNTVFNGK ATIDMLEKEG GYAFQEGYWW 1141 NRGLVQHYLK DRFLLPWKTE NSYTSFPSSL YAKAVYEYDQ YSLAPVKATK FITDKITNTS 1201 SALLDYTILL PVQITDINDN VSQAFFDPLG MVIATSVFGT MGGKPAGDRD LKEYKAIPQV 1261 DTTFDDVLAN PHKYLQDATT YFYYDLSAWK NKGQPARSVQ LTRETHVSDL AAGEKSGMHI 1321 QINYSDGFGR EIEKKLKADA GEAVLRDNAG KPVYDAAGKI VKDFAQDRWI VSGRTVYNNK 1381 AKPIKQFIPY FSATPDYELQ KDIDPILPKP TIIYYDPLLR VVKTVNPKGF FSKVEFTPWE 1441 EKHFDENDTV RDSVYFKNFK ETYSKDPSQE QRDEKDALDK ASRSYNTPDT KVLDNTGQTF 1501 LEIRNNLGEI TKDILQDIVK GTEVNCQELW DELKSKGYIE TGDPPSAMGW VSGKFRPYFK 1561 GFMLGLDGRY KQFEEKIINL LKENCLTTYH ELDIQGNVLF SVDPRLYYSN LKDHTDYYNF 1621 KYVYDMQKKP LSVDSADAGL KLSLSNIFGN TVHSWDSRGF HTRKMYDSLQ RCVQIGVEGN 1681 DGRGLVLHQA VEKFVYGEFY EEKEEASKDK NLRGQVYKHF DQAGVVTCNL YNLKGKAVQT 1741 DRQFLADYKK EANWDNVNKS SLADELFSIG CSYDALERVI SETAPDGSIY THIYNQAGLL 1801 RKVVVAFKDG SEEEFIKDIQ YNANGQRLKI IYGNGVTTEY SYTDPALRLT DILSLKPDSN 1861 NTKDFKGCLL QKIHYTYDPV GNVTRLRDNS YPTVFYNQQK VEPLSDYSYN PLYQLVSATG 1921 RQHPGIFDGS HRDGFKQSKF IPIKSSNPND GTSLENYRQD YQYDEAGNLT NIRHISSSTS 1981 WTRQLDISKG TNRTVQIASL NGAKNFFKTA YDPCGNMLNL ENLASINWSY RNNLSRVDVI 2041 LRENNSSDSE YFIYDSSGQR VRKVSERKCG SLREIEEKLY LGNFEIKRIK KKSDHLESQI 2101 LDRQSLHIMD GKSRIAITDI WLKDDLNRET EKTMERKFRY QLNNNLGSAC LEVDEKVNII 2161 SCEEYFPYGG TSFIAGRDKR EVKLKEYRYC GKERDDSTGF YYYGARYYLP WLGRWINPDP 2221 AGTVDGLNLY SFVKGNPVNF IDTSGKVGGS WLHLLYGGLT ALAVGLIGGA AVGTGDYASP 2281 VVAALAGLAG MLFNKDKSAL GALAIAGAGA IGSAVGGYVG RGTMSKLKEK DWQTTSVART 2341 GLVASGLTGG TIGSLGVLAV QAVTRQFNTH NILMGAIAGF GGGILASGAQ FGLFKPGDAK 2401 VPTMPVRAEL KDLLPYQTRA FDRHYLELNP NPEELITNLK PKHFTVIDEE TQQRVKCDLV 2461 AVHGYPRFSF VQSVHGDYNQ YIDKEKLVQL LQQAGFPHQD STTGKNIPIK LATCFGGFWE 2521 SWFSTAQLVA DKLGTEVYAH RWPVTVAQQS PWKKFTPN //