LOCUS       ABA58526.1               579 aa    PRT              BCT 28-JAN-2014
DEFINITION  Nitrosococcus oceani ATCC 19707 RNA polymerase, sigma
            70 subunit, RpoD protein.
ACCESSION   CP000127-1972
PROTEIN_ID  ABA58526.1
SOURCE      Nitrosococcus oceani ATCC 19707
  ORGANISM  Nitrosococcus oceani ATCC 19707
            Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
            Chromatiaceae; Nitrosococcus.
REFERENCE   1  (bases 1 to 3481691)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
            Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
            Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
            Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Nitrosococcus oceani ATCC 19707
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3481691)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
            Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
            Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
            Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            Source DNA available from Dan Arp (arpd@bcc.orst.edu)
            Bacteria available from ATCC: ATCC 19707
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LLNL
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
FEATURES             Qualifiers
     source          /organism="Nitrosococcus oceani ATCC 19707"
                     /mol_type="genomic DNA"
                     /strain="ATCC 19707"
                     /culture_collection="ATCC:19707"
                     /type_material="type strain of Nitrosococcus oceani"
                     /db_xref="taxon:323261"
     protein         /locus_tag="Noc_2066"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /transl_table=11
                     /db_xref="InterPro:IPR000943"
                     /db_xref="InterPro:IPR007624"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR007630"
                     /db_xref="InterPro:IPR007631"
                     /db_xref="InterPro:IPR009042"
BEGIN
        1 MDFEMRQEEL KRLILKGKAQ GLLTEEELQD YIIQEVEDSD EAETMAHLFH HHQGLDEFNE
       61 ALDSTLLLKN SSEEEIAETL PTLEGESTGA VSDMVYAYMR EMGAHALLTR EEEITLAKAI
      121 ETGLSQSTEA LGNCPAAVAE LVRWAEEVAT GKGRLKDWLT GFTEPEIEET EIKDGKESSL
      181 EATSKHLSRV RTLYGNLEAT LAQEGVASPR ARELRRKLAR EFQFLRLIPS RINQLTQLVQ
      241 GWISKAQTQE QIIRSCCIHQ GEMSQEDFWH NFSSGTTHPQ WLDDLLAHSR IDRQGLQTQA
      301 KTLRAAQAVL LQVEVEAGLP LDELKAIHQR LVRSQFQAQR AKAQMVEANL RLVVSVAKKY
      361 RNRGLTFLDL IQEGNIGLMK AVDKFDYHRG YKFSTYAHWW IRQAITRAID DQSRTIRIPV
      421 HVMEKLSKLN RASYQLRQEK GREGRPEELA ERLALSEQQI HRMHEIAKQP ISLETPLGKD
      481 EDSQLGELME DEQVPNPMEV AITAGLQTGA QQLLAALSPR EAQVVAMRFG IGMDTDHTLG
      541 EVAQQFDLSR ERIRQIEAQA LGKLRRLGHS KALRNFLED
//