LOCUS       AAL19854.1              1053 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative Fels-1 prophage minor tail protein protein.
ACCESSION   AE006468-890
PROTEIN_ID  AAL19854.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          2776826..2844430,2879238..4857450)
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /locus_tag="STM0918"
                     /note="lambda phage H tail component homolog (gi|2232364)"
                     /transl_table=11
BEGIN
        1 MDQIANLVID LSVDAADFKN EVPRVKKLLD EVSGKTDLVT QRQKNLIETL KSQGRAYVDG
       61 SIAASDAGTR QKQAMVMAAQ GYDQVAQRVD MTQRHVAALS QKMQEERAQA AAVAAAQDQA
      121 SAAFYRQIDS VKSLENGLQQ LQRIQTQIRQ ARNSGGIAQQ DYLALTSEVA AKTRTLTDAE
      181 AAATKQKVRF IQRLKEQVTS QRLSSTEILR VKAAQLGVSS AADIYIRQME NAGTVTRSLG
      241 LKSAAARREI GVLFGELARG NFGALRGSGI TLANRAGWLE TLMSPKGLAV GGTVTAIAAA
      301 VYGLGKAWYS GTKEGEEFNK QLILTGNYAG KTAGQLQQMA RSIAGNGITQ HDAAGILAQV
      361 VGSGAFGSTD LSRVANAAAR LKQATGQDIS ETISQFKKLK DDPVNAVVAL NDSLHFLTAT
      421 QYQQISAAQA VGDSQLAAAL AIQAYSDAVM QRTGAVQDNL GSLEKAWNWV RNAAVGAWDA
      481 MLGVGRSPDT AMKRQDMFAQ WQAAEKEYQV LSRNLKVDPD YSGSNPLQKA DAERLRNARQ
      541 SLALKKAAYD EADKAYAQEG LAAAMEKQRT DQQAQAIRSQ QEFNQLVKNG TSQAEKRAQA
      601 EQELNQLIAK NRRDAKDGVT ALWTEKDISS ARTGIEKRFK DPTPPKTAAT RNDEASRLLL
      661 RYSQQQAQVE GQIAAAKQSS GLNTDRMTEA HKQLLALQQR ISDLSGKKLT ADEKSVLAHK
      721 TELVQALTLL DLKQQELQRQ SALNDLKKKA VQLESQLKLE EQSQRQRHDL DLATAGMGDV
      781 QKQRYQEQLT LRQKFAQQQE QLERDSRQKG TYGSAEYSEA EQKLRDSLNV QLNENRRYWQ
      841 QLSVEQGNWK NGATRAFQNY TADAGNAAGV AEQLFSSAFS SMGNGLATFV TTGKLSFKSF
      901 TASLLSDLAK IMAQMAMMQA VKGVGNALGF GVTANADGGV YQSASLSRYS GSVVNTPTFF
      961 AFAKGAGVMG EAGPEAILPL KRGADGKLGV VAAGMGGMAM FAPQYHIAIN NDAGNGQIGP
     1021 GALKVVYDLG RKAAADFIAQ QGRDGGRLSG AYS
//