LOCUS       AAL19139.1               848 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative fimbrial usher protein.
ACCESSION   AE006468-175
PROTEIN_ID  AAL19139.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          2776826..2844430,2879238..4857450)
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /gene="stiC"
                     /locus_tag="STM0175"
                     /note="similar to E. coli putative outer membrane protein
                     (AAC76178.1); Blastp hit to AAC76178.1 (838 aa), 39%
                     identity in aa 20 - 558, 34% identity in aa 493 - 837"
                     /transl_table=11
BEGIN
        1 MRKRQHRVFY LSRCAVCIAL GSTFTHVAWA RDYFNPAFIE NHGQANRTSV DLSTFDNDKS
       61 QLPGTYYVTI NINKTEIGAR NVDFQLATLS DGQQALQGCL RLQELKDNGV KTDLFPTLES
      121 EKGCVDLSVI PGASQRFDFQ QQALSVSIPQ LYIANNARGY VPPEKWQEGI TALMLNYSFS
      181 GYKEYGSSED SDDAESKYLA LQPGFNLGPW RFRNYSNWSS NNGENGSWNS VYNYLQRDII
      241 ALKSQFTAGD SNTPSDVFDS VPFRGLQLTS DDQMQPNSQR GYAPTIRGIA RSNAQVIVRQ
      301 NGYIAYQTAV SPGEFEINDM FPTGSNGDYD VTVKEADGSE QHFIVPYSSL PILQRTGRAK
      361 YSVTVGKYRD YNNHALDDFG QATLLYGLPW GITLYGGSQI AGDKYQSVAF GVGQNMQMLG
      421 AISLDGIWSH AKFDDGRKEI GQSWHVRYSK GVVSTGTTFS LAGYRYASEN YNSLSEVINP
      481 DDDFYDNYGK RHNRFEASVN QQISNTLGSL TLSWVKEDYW HSAQQMESLS ASYNNSWGPV
      541 SYTLSYSYNK NTYQYRSDND DDDNDDDRYN QNDRLFTLSL HVPFTVFDSR LYASYMLNTR
      601 KHDATVNSTT LSGTALRDRN LNWSLQQSHS TQDGDSGGVN ASYKGTYANL NAGYNQSPDS
      661 QQVSYGISGG ILAHENGITL SQPITGAAIL IKAPGASGVS VENQTGVATD FRGYTVIPNV
      721 TPYYRYDISL DSSTFADNVD IPLNNQTVYP TRNAVVRAAY DTHKGYRVLL TLTRSNGEPV
      781 PFGATASVDG QDANLASIVG DKGQVFLSGL PEEGLLLVNW GSASCRADYR LDISKNMNGI
      841 VMANAVCQ
//