LOCUS       AAL19060.1               968 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 RNA polymerase associated protein protein.
ACCESSION   AE006468-96
PROTEIN_ID  AAL19060.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          2776826..2844430,2879238..4857450)
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /gene="hepA"
                     /locus_tag="STM0096"
                     /note="putative SNF2 family RNA helicase; similar to E.
                     coli probable ATP-dependent RNA helicase (AAC73170.1);
                     Blastp hit to AAC73170.1 (968 aa), 93% identity in aa 1 -
                     968"
                     /transl_table=11
BEGIN
        1 MPFTLGQRWI SDTESELGLG TVVAMDARTV TLLFPSTGEN RLYARSDSPV TRVMFNPGDT
       61 ITSHEGWQLH IDEVKEENGL LVYVGTRLDT EETNVTLREV LLDSKLVFSK PQDRLFAGQI
      121 DRMDRFALRY RARKFQSEQY RMPYSGLRGQ RTNLIPHQLN IAHDVGRRHA PRVLLADEVG
      181 LGKTIEAGMI LHQQLLSGAA ERVLIIVPET LQHQWLVEML RRFNLRFALF DDERYTEAQH
      241 DAYNPFETEQ LVICSLDFAR RNKQRLEHLC DAEWDLLVVD EAHHLVWSTD APSREYMAIE
      301 QLAERVPGVL LLTATPEQLG MESHFARLRL LDPNRFHDFE QFVEEQKNYR PVADAVAMLL
      361 AGNKLSNDEL NRLGDLIGEQ DIEPLLQAAN SDRDDAQAAR DELVSMLMDR HGTSRVLFRN
      421 TRNGVKGFPK RELHTVKLPL PTQYQTAIKV SGIMGARKSP EDRARDMLYP EQIYQEFEGD
      481 TGTWWNFDPR VEWLMGYLTS HRSQKVLVIC AKATTALQLE QVLREREGIR AAVFHEGMSI
      541 IERDRAAAWF AEEDTGAQVL LCSEIGSEGR NFQFASNLVM FDLPFNPDLL EQRIGRLDRI
      601 GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD AFEHTCPTGR AIYDSAYASL INYLAAPEET
      661 DGFDDLIKSC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ QLAQSIEEQD DDTNLIAFAM
      721 NLFDIVGINQ DDRGDNLIVL TPSDHMLVPD FPGLPEDGCT ITFERDVALS REDAQFITWE
      781 HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELVY VVEAQAPKQL QLNRFLPPTP
      841 VRMLLDKNGN NLAAQVEFET FNRQLSAVNR HTGSKLVNAV QQDVHAILQL GETQIEKSAR
      901 ALIDNARREA DEKLSGELSR LEALRAVNPN IRDDELAAID SNRQQVLESL NQAGWRLDAL
      961 RLIVVTHQ
//