LOCUS       AAL19005.1               679 aa    PRT              BCT 24-JUL-2018
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium
            str. LT2 putative glycosyl hydrolase protein.
ACCESSION   AE006468-41
PROTEIN_ID  AAL19005.1
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 4857450)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
REFERENCE   3  (bases 1 to 4857450)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
COMMENT     On Jan 13, 2016 this sequence version replaced AE006468.1.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
FEATURES             Qualifiers
     source          2776826..2844430,2879238..4857450)
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     source          /organism="Salmonella phage Fels-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:128975"
     source          /organism="Phage Gifsy-2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129862"
     source          /organism="Phage Gifsy-1"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:129861"
     source          /organism="Salmonella virus Fels2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:194701"
     protein         /locus_tag="STM0041"
                     /note="similar to E. coli orf, hypothetical protein
                     (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25%
                     identity in aa 116 - 547, 27% identity in aa 549 - 665,
                     25% identity in aa 84 - 149"
                     /transl_table=11
BEGIN
        1 MPFMQQDPRR LVWQQNDRYL WIEPWGENSL RVRSGRHLPV MRNEDWALTE PVAESQCHID
       61 YEHHQATLTN GKIIAIVNQK GQVTFYRHPH KPLLQEFWRL RGEIGEDESS HGQYVSALNL
      121 EGREFRPIQG GKYSLKARFE ATEGEKIYGM GQYQQANLDL KGCVLELAQR NSQASVPFML
      181 SSLGYGFLWN NPAVGRVTFA QNVTEWEAQV SEQLDYWITA GDTPAEISRA YALATGTPPM
      241 MPDYAMGFWQ CKLRYRTQEE LLEVAREYKR RNLPISVIVI DFFHWPNQGD WMFDARDWPD
      301 PDAMIAELKS LGIELMVSVW PTVDNRTESY REMRENGWLV QTERGLPINM DFLGNTTYFD
      361 ATHPGARDYV WGKAKRNYYD KGVKLFWLDE AEPEFSVYDY DNYRYHAGPV LEVGNIYPRM
      421 YAKTFFDGMK ADGEDQVINL LRCAWAGSQK YGALVWSGDI HSSFRSLRNQ FAAGLNMGIA
      481 GIPWWTTDIG GFHGGNIHDP KFHELLIRWF QWGVFSPVMR LHGNRDPQIL PAQPYRDGIA
      541 QCPTGAPNEV WSYGEEVCEV LTGCLALREK LKPYIKALME ETHKHNTPVM RPLFFEFPEQ
      601 ETSWTITDQY CFGPDLLIAP VMHEGMRERD VWLPEGETWT DLATGESYSG GQTLQYATPL
      661 NRIPVFIREG GQYRSLLNL
//