LOCUS CAD56284.3 1077 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Receptor-type guanylate cyclase
daf-11 protein.
ACCESSION BX284605-4206
PROTEIN_ID CAD56284.3
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 20924180)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 20924180)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 20924180)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="V"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="daf-11"
/locus_tag="CELE_B0240.3"
/standard_name="B0240.3a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000907"
/db_xref="EnsemblGenomes-Tr:B0240.3a"
/db_xref="GOA:Q8I4N4"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001054"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR001828"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR028082"
/db_xref="InterPro:IPR029787"
/db_xref="UniProtKB/Swiss-Prot:Q8I4N4"
/db_xref="WormBase:WBGene00000907"
intron_pos 8:1 (1/15)
intron_pos 40:0 (2/15)
intron_pos 126:1 (3/15)
intron_pos 188:0 (4/15)
intron_pos 272:1 (5/15)
intron_pos 336:2 (6/15)
intron_pos 361:2 (7/15)
intron_pos 392:0 (8/15)
intron_pos 451:0 (9/15)
intron_pos 483:2 (10/15)
intron_pos 575:1 (11/15)
intron_pos 635:1 (12/15)
intron_pos 809:0 (13/15)
intron_pos 844:0 (14/15)
intron_pos 932:0 (15/15)
BEGIN
1 MGPTCSSNFL RFANLTAEMQ SLEINILKGY PYEHPTMIDM VTRSPQNLAQ NLVSLLRGFE
61 WGQVGAVLCE ECYEGDELAS EIYFSTIEDI FENNNIALKE TVRIGKRENS VNISDAITIF
121 EPSARVILLF LGNKLNDYTE FMTAMSMNNY TTEEYTPVIV ISKNSLELTF PWKENDAIAE
181 LFDKAIIVYN NCYDKSKISS FLSSYSFSTI EETIISLQMY EGYHLLGYYL YTAITNTTLF
241 NYVQPEKAIS SMSIPGPFGE IFINSNGQRI AGYDVLVVDK SLNSNNFIMP LGTISTDKKC
301 PDQACLNFVL NSTSSFEPLK DVPLCGFHGE ICDQTGVIIA IAVIMGVLLM FIIILTTIRK
361 CCNGSKGRSI SNPWVIPFQD VRFIDLTNTE GSQHMSIQSL QRNMEEKQRL QSLARTKHIA
421 TVDQVYVLAD KYVMRDKLRY DKIDINLLYQ MKSHLQHDNL NSFVGITIDK ASHMYIIWNQ
481 CFRGSLHDHI FTKERQRGTA TRFEGLFLRD ILKGLEYIHA SAIDFHGNLT LHNCMLDSHW
541 IVKLSGFGVN RLLVKWKTSG QIFTEDHTPV IKSEELHYFD PAMKKIWKNY ADRNERALIT
601 PQFGKKCDMY SFGVILHEII LKKKFVEQLF DSPREEDDSV LIDDENDAIA SRFPLPIIIP
661 EGIEMHNDLI KMLENCFGSV RPDIALARKI IDTVLKMSGS LVDLMIKNLT AYTQGLNETV
721 KNRTAELEKE QEKGDQLLME LLPKSVANDL KNGIAVDPKV YENATILYSD IVGFTSLCSQ
781 SQPMEVVTLL SGMYQRFDLI ISQQGGYKME TIGDAYCVAA GLPVVMEKDH VKSICMIALL
841 QRDCLHHFEI PHRPGTFLNC RWGFNSGPVF AGVIGQKAPR YACFGEAVIL ASKMESSGVE
901 DRIQMTLASQ QLLEENFPQF VCSNRGGRTI EGIGRILTYW LEGVNAGEQV KVVEFQNDLN
961 DELSRIMKKD GELLAAATAL KPKDKMTLAK EKVIAERKNE EERLQRQQTL QEALEEHEEE
1021 IEMNEVLVDE DEGEGKPKEV DLTSIVSTQM EELEDEPAGR TIGHGRLDSQ ASTIPDN
//