LOCUS CAB63432.2 1217 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Synaptogenesis protein syg-2 protein.
ACCESSION BX284606-3519
PROTEIN_ID CAB63432.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="syg-2"
/locus_tag="CELE_C26G2.1"
/standard_name="C26G2.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007750"
/db_xref="EnsemblGenomes-Tr:C26G2.1"
/db_xref="GOA:Q9U3P2"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013162"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="PDB:4OFK"
/db_xref="PDB:4OFP"
/db_xref="PDB:4OFY"
/db_xref="UniProtKB/Swiss-Prot:Q9U3P2"
/db_xref="WormBase:WBGene00007750"
intron_pos 82:0 (1/21)
intron_pos 124:1 (2/21)
intron_pos 165:2 (3/21)
intron_pos 230:1 (4/21)
intron_pos 288:0 (5/21)
intron_pos 329:1 (6/21)
intron_pos 355:2 (7/21)
intron_pos 383:0 (8/21)
intron_pos 429:1 (9/21)
intron_pos 474:0 (10/21)
intron_pos 526:1 (11/21)
intron_pos 587:2 (12/21)
intron_pos 635:1 (13/21)
intron_pos 731:0 (14/21)
intron_pos 776:2 (15/21)
intron_pos 882:0 (16/21)
intron_pos 974:0 (17/21)
intron_pos 1064:1 (18/21)
intron_pos 1116:0 (19/21)
intron_pos 1143:1 (20/21)
intron_pos 1165:0 (21/21)
BEGIN
1 MLSQAILLWL FGSIHISSQF FLESPSNLST IAGESITFRC SAEKSPEPIV YSQWKSNTGS
61 LLGYHQEGIL PGHQGRFSYI KQNAEELHLK ITHVNLDDDG EYECQMLHPE EGPIRAKSFL
121 NIIVPPQLVY FSNYQPNSII AVKENTPLNI TCVVPNVKPE PEVLWYMDGK VMSRDVKQAS
181 TPHLNKTFTV YTSLVVQSDR NDHGKVITCE AFQKETDIRI TTNTTLDVLF PPSDPTVEIL
241 RNPSALRSGD NVTIACSVTG GNPPPDVFWY HENKRLQSHS TLDTRSKEIK NIYSFIASQN
301 DNMAEYECRA NNSRTGNPKR KAMKLEVNYP PASVELFGES NIRYGSSANI QCKSLPSNPA
361 SQITWIINGR SVPTPTQREF VVENGIVSSS NVSVHSNELS VEAHQINVEC MATNPEGSSA
421 KQHVIKIIAP PKAPIITGLE DRKFFEGDIV NVTCEAQGGN PLAELSWYRG SEKVNGAHNE
481 VAGFSSYSTL ALRVDRTMNT QRLKCEATNA ALDEPLIESQ YLSVYYPPRR VLIRPADSGD
541 QRLLVGKSAR LVCGTLSSNP AAHISWQFSR ATDDNKVHLG DVSLNETTRD NGFNVENVLS
601 FTPTEEYDGT VVHCIANHPE WKHSVNTSFP LNVMYPPKML VNDPVTVVMS EGDSFKENLT
661 VRGNPAISLW QWRKNGVPFD HTIGRVFARG AVLSGKQLLS TDAGVYTLTA TNSVGSTNIT
721 IKLAVEYSAR ITSISTPVIA ATGDTVLLEC EADGEPSKAN MIHWYKNGEI LAAQHRGHKK
781 AILRLNATEQ QSGEYTCKAD NGIGVPAEGQ TFLLVNSAPR VLPVARYAKT AGILGGVAKA
841 RCKVYAVPTV EFVWEKDEQL IKKNSSKYSI VNTQIDYSTY ESTLWIKNIV PDDYTKKVKC
901 IARNSFGTDH LSIPIIPPTH PDEPFNLTMT NSTLNTISVA WEPRFDGGSD QIFEVKYRRQ
961 NDDLIHLVNT THTNLRLSGL ATANTYFFQI RSINARGFAS SWTSPVIFAT LNEDGVNVAM
1021 IRNEKLKLTT WIPYILIFIV LFMLLNVVIC CFVCNRTKKR KLREKTEMAR TAINGGDVRQ
1081 VQMYGTMMGN DGMSRRDIDD RPEMSEDEHS VRTMIEVSPN GYMQPIEPML YESTGLLEYD
1141 YQTRSYMGSS QGTRSMTYAN VPYPEPPQPS YHSNWNSLQR QSNNNTSPQH HLSTFINPNM
1201 GVRAGPINYA QLDGDLV
//