LOCUS CAB03358.1 663 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Small Nuclear RNA (snRNA) Associated protein protein. ACCESSION BX284604-3138 PROTEIN_ID CAB03358.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493829) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17493829) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17493829) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="IV" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="sna-2" /locus_tag="CELE_T13F2.7" /standard_name="T13F2.7" /note="Product from WormBase gene class sna" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00011747" /db_xref="EnsemblGenomes-Tr:T13F2.7" /db_xref="UniProtKB/TrEMBL:Q94050" /db_xref="WormBase:WBGene00011747" intron_pos 56:0 (1/6) intron_pos 80:0 (2/6) intron_pos 122:1 (3/6) intron_pos 215:2 (4/6) intron_pos 375:2 (5/6) intron_pos 638:0 (6/6) BEGIN 1 MIELNPVKEY ENVDTQSDAF DSVENVAEDK INDKSLRTIV VQNLKHPGGW LRNRQFQMLL 61 NRCVIFDVSF SRPEDTDEKQ IKYGKVEFVF STVAGAREAY STIQKMIIDG IRPEALVDPQ 121 FFSVETFQSS RQFFDISNDT RLVFLLDAPK SIDDHMISYF FEGKTPIHFQ TLPMPSSNGL 181 FQVEVLLSDK ETAEKVLAGP SKFSMSDEDN ECTVTLLSPR EYSLYSKMDD IQQSTSAKKP 241 LKQSYISENV GQTLAPEIDE DVISNRLLEI IDERKLNFAE INEKNELYEL CDTVSSEYNG 301 VPDSILKPAM GSVLQKHLNR TEMHWMREHL EGLLRVWKIE ILNEQTYERP SFVPMETVAY 361 QPVVEEQKTE STSKGAEKRQ RAARKQMGVA AFLNANRDRL IVETGDVDMD SDDDGNVTIG 421 GEALSFDSWA RITKTKASGV VRANDDGSKK IGNGGLSKKQ MRQARIVEGM SQEEWKKWRN 481 EKSSNRKADI KQRIMARGAI IDEGEIDNET AVNGNSEVAI ETVEPSPTLA AVKRILDEGE 541 IDSDEEKQQA SKSKKKKPAT SDSSDSTSSS SEEDFDGPVD ARKRRKLRRK KDRKNPRTTT 601 ASSLLDPTFR QMFENRKTIL AQMTPAHKSA FVSALTQIVN NNPSGVSQAK ASQVINTMMS 661 GFK //