LOCUS CAA98481.2 822 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Probable RING finger protein 207 homolog protein. ACCESSION BX284605-4056 PROTEIN_ID CAA98481.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 20924180) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 20924180) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 20924180) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="V" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F47G9.4" /locus_tag="CELE_F47G9.4" /standard_name="F47G9.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009831" /db_xref="EnsemblGenomes-Tr:F47G9.4.1" /db_xref="EnsemblGenomes-Tr:F47G9.4.2" /db_xref="WormBase:WBGene00009831" intron_pos 14:0 (1/7) intron_pos 79:0 (2/7) intron_pos 259:0 (3/7) intron_pos 381:1 (4/7) intron_pos 422:2 (5/7) intron_pos 503:2 (6/7) intron_pos 601:2 (7/7) BEGIN 1 MEENPLQCTI CKNEFEEPIL LSCQHTTCRK CSTGSPSCKS CSPIPSTSRS HTPHPDKLAA 61 FLLDASKEEM EECANCEQIS LPMFYCETCQ QSLCLVCRNV THQARMFSSH KIISSDERSK 121 VYSSSLCKDH NEPYILYCSD VRKLVCIQCF NGRPLEERHS FISIEQGHRL CLERIEQSAA 181 KLRFYQSERQ EELNVRQRVL DENASNFDDA RASLYQLCQQ IIDTVMTTRE TLAKELVKQQ 241 EQSDEQCKRQ IKEIEAVMGP VRLCLFSAQI LCTTASKLDV LQLCPQLQKR IGVLLDKTID 301 KLPVSSTPDS IEVRSDLAKA LEPFLGMSAA WCPISVSREG SSSNSYKRGS GSHKAISMLS 361 KFQATIDLAG AFGELFGKVE HPLRQLVTAL SSTSQQVLET QRDLTIRRCI IEKEDVEKLV 421 KTCKKIEAGL GMHSAALDGM QSEMQEIWQE QLDRVRRQQI IYREKVEEIL NLRETARQIL 481 TAAKQLVPYV SCILNMNAMI DPKRCHPPDP APMESICLEI TGIEPNSQNR ILAIEKEEEN 541 RRLNQEAKKK EELAGQSAVM KTLKHGKIKR KEMNRMMLNT NRERSPGGTD TALTSPCIRR 601 LTTALKEETA SELDAEEFLD EIFELSGEQY DEVVDGTLTE EDRCSSALLL SMEISSDSIS 661 PLPSLEQLLG RIPLASRVTS NIGFSRGAML QSLNDVFALQ KPPTPENISV SEERNVLASA 721 VRNAEKRKSG AGLPTNSDKD EVIEKEEIEK ETEKEKKKVI RRRVKKVSEP SEEEVTTFTF 781 NAPPDCPFVP QEIFESDEKL GTFEAKERVL QSLKQKMNQK TE //