LOCUS CAA93426.2 1477 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lysine-specific demethylase rbr-2 protein.
ACCESSION BX284604-3602
PROTEIN_ID CAA93426.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17493829)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17493829)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17493829)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="IV"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="rbr-2"
/locus_tag="CELE_ZK593.4"
/standard_name="ZK593.4a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004319"
/db_xref="EnsemblGenomes-Tr:ZK593.4a"
/db_xref="WormBase:WBGene00004319"
intron_pos 49:0 (1/9)
intron_pos 93:0 (2/9)
intron_pos 238:2 (3/9)
intron_pos 301:1 (4/9)
intron_pos 971:2 (5/9)
intron_pos 1034:1 (6/9)
intron_pos 1133:0 (7/9)
intron_pos 1351:2 (8/9)
intron_pos 1451:1 (9/9)
BEGIN
1 MRARRQENSI STPSAPSTST SPRKKASIGN SRSKNHGSKM EMYDQFYKKF VRPPMAPIYY
61 PTEEEFSDPI EYVAKIRHEA EKFGVVKIVP PANFKPPFAI DKEAFTFRPR TQKLNEVEAI
121 VKEKHTFIDR LINFNRYSGL TFEFPVDRDG NIVDLYRLHR IVQNFGGCEE VNEDEKWRDV
181 AREYLPKEQM ARGVPSAFIN LIRSHYNLHI EPFNRNLKEK AMKNDDESDD EMEELKHKYQ
241 HHHGTMRTEI EVPNDKTTEG GEDECPVSMQ SGRRRSKNKK ASSSRKTLGT SSKKNSTRGR
301 KNKKKAEGDD DDDEDPMDQV FCVACNEGKD EDLLLLCDID GCNNGRHTYC CDPVLDEVPE
361 GEWRCPKCIE SEDAKIGLDW GFYDADTEYN LNSFTEFANK WKCDYFGVKD VSQVSCDAVE
421 RSFWKNVISH ENPVSVKYGA DLITSRVGSG FPRKEDKHTG PDLKLKQQYA SHAWNLNNMP
481 VLRESVLSHF NTGISGMMVP WVYVGMCFST FCWHTEDHWT YSVNYNHFGE RKIWYGVGGE
541 DAEKFEDALK KIAPGLTGRQ RDLFHHMTTA ANPHLLRSLG VPIHSVHQNA GEFVITFPRA
601 YHAGFNEGLN FAEAVNFAPI DWLSKGRECV ESYSNVRRYL VFSHDELLFK MVEAMDKLGI
661 SMSLATHEEL IRIYEKQKML RELLARLGVS NRQMQQVMFE KIPDEQRSCR FCKTTLFMCA
721 LVCNKHKKMT CVEHHDHLCN SCTTKDYRYQ YRFELDQLNN MCDELGKRTV NYNGWKEESD
781 EMLEEEGKPK LERIEEFIDS AKQNKYPQTD QVHKLITIRH TAKSAIEKAN QLLFKKVRTR
841 TKTRCQRADT RTDTEGVRSL IEQMQAMDCN LTVIIDKLEK WMEQVEMWRN RAKDAIYREQ
901 EYSKEEIEKI IEEGDEYDIK LEEIDELRKV IQMKDWSDRA RKVTTWKATP DMEKDIDFEY
961 KLRYASSDIL SLIRDSPRNP TDGTSKLVFE LQQMLRDANT LEVIANNFCE NPALDQLQSI
1021 WQSLRETDWF YEKYINMVRY EIIHVAKIKS MIDAAIPVLS EFDLKTQLQK IVNVEITLSK
1081 AAEISKAFET SKCLNGSEEH LGILDMISTM NAFTQRIAIL FKPNNAYHNL FEILSERDDL
1141 TPLAEGQTIP LYFQGGAVHP SDEWHQMKEF ESLDQIVHHQ SSLREMQMRI FEKVKQANSA
1201 RGLEACSCLG FNKSDDSEST LTCIMCDSEF HVRCCEWSPF LEKLPEGCFL CVRCLRGQRP
1261 VIDDVTTALN GTPSGCLETH LVRNLIQKTR GITQNLMEAA NKRKSGESSD DICKIALFDW
1321 LSCEILNPNG LPKARELISE FYMEYLQKQS SAALELKNRP VRSKPSVSLF DPKITAKRKR
1381 PSVSHKETSK KSRKRQSQAS PSEYYEDESE FKSCQARACL KPYGDSVNWV MCEAGCKNWF
1441 HVICLGFTLR EINDMHEYRC SSCLDHADSP TSSVSTD
//