LOCUS CAA92604.1 447 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PHD-type domain-containing protein protein. ACCESSION BX284604-3251 PROTEIN_ID CAA92604.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17493829) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17493829) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17493829) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="IV" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F44D12.8" /locus_tag="CELE_F44D12.8" /standard_name="F44D12.8a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009685" /db_xref="EnsemblGenomes-Tr:F44D12.8a" /db_xref="UniProtKB/TrEMBL:Q20395" /db_xref="WormBase:WBGene00009685" intron_pos 24:2 (1/8) intron_pos 95:0 (2/8) intron_pos 129:0 (3/8) intron_pos 162:1 (4/8) intron_pos 204:0 (5/8) intron_pos 307:2 (6/8) intron_pos 345:1 (7/8) intron_pos 414:0 (8/8) BEGIN 1 MKSTTNLPIR QNDDNRRRKE GKSQNRRGGP KSKPQPTIVP PRKTPSPSTV TPLPTVIALP 61 AVSTPSPAQA NLLKDPTATS PNVPGRERKA IRRKVTKEKV EKDPPKTTVR KKKNQVNQSL 121 SAENTNAKTS SDNDERAGSK NDKPKKKNSH TSSDSRRRRS SAEIPSSGSK EDEKSGQKFN 181 KDLAKNFFKH VQSQRAQKRS DDARLERMPE SSQLNASARA MRKKKTNAPK TSLDSDLFKP 241 NGEPVWVVPE RAPGDCEKND EGVPITNPEL VAALAEDNIE IDEKSWFDHI GDYMSCAMPR 301 GVTLPENHTF DSLAPRDKLE ANSDFVSQET VAYNTVKNLV ELSEDAIKRF SMKRDGIDDR 361 ARPTVTQDTT VETTIETTMP LPPVKALSTD TISTTPGKAI SFHMKNVVCL SYDRNHPIQS 421 IRKFRKKMSS KGVMEQSTQP KDSTKEL //