LOCUS CAA91335.1 565 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans F-box domain-containing protein protein. ACCESSION BX284602-4087 PROTEIN_ID CAA91335.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F54D5.9" /locus_tag="CELE_F54D5.9" /standard_name="F54D5.9" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00010053" /db_xref="EnsemblGenomes-Tr:F54D5.9" /db_xref="GOA:Q20775" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR038946" /db_xref="UniProtKB/TrEMBL:Q20775" /db_xref="WormBase:WBGene00010053" intron_pos 50:1 (1/5) intron_pos 119:1 (2/5) intron_pos 178:1 (3/5) intron_pos 392:1 (4/5) intron_pos 480:1 (5/5) BEGIN 1 MFRRTEPPFR LLARKRRNSD STPPITKFFA TVKRERSSSE SKNVCQKLDE SFEAPNNLSQ 61 TSHTDSPDNG LLYSLEDLRA LLGVPVKFSS KCVPSPDAPV GLENLPNRAY SHIFTILDMQ 121 SINALSLTST KLCSRVKTYV STHDFFRRMQ LDNLDFLNSS LRPDDEEFLE NDPFTACGGL 181 IKSITITMNT KIRAQVFLNI CRNLRDQLGG SLHGFGRLLE TITHNWKFSE RRIMVKAAIM 241 IDADLRPSII KVLTAKPGQL IGLEMKVRSG LTQLFLNLSQ DIDEASPQEI IEFGSWLSVL 301 IRNVIEKYQG KFYYILFGPT RSSRIGERVD WAYFCEDDSD TFTLRKSEPN YRKLLSTLLN 361 GIRALRIMNN SKSSDQMWSG KKLYQLFLRI IEVCEVQGFW SETSSSMALA IDSSGLLSEY 421 LVTCLDPRRD DYETLQNEAA EMVCLVRNHL YRWSAAPATF LAEPLHHAFN HLAQLDGHYD 481 GCYKAFLEKI WNVQSSRLKE MVKNATNTTE CSEKIREELD GQLSMARLLT DISNTVVLHQ 541 IGFQLPNDLA AELVNDPLEE EEQLE //