LOCUS CAA90359.1 1415 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Zygote defective protein 9 protein.
ACCESSION BX284602-3021
PROTEIN_ID CAA90359.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="zyg-9"
/locus_tag="CELE_F22B5.7"
/standard_name="F22B5.7"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00006994"
/db_xref="EnsemblGenomes-Tr:F22B5.7"
/db_xref="WormBase:WBGene00006994"
intron_pos 65:0 (1/9)
intron_pos 351:0 (2/9)
intron_pos 544:0 (3/9)
intron_pos 573:0 (4/9)
intron_pos 624:0 (5/9)
intron_pos 775:1 (6/9)
intron_pos 891:0 (7/9)
intron_pos 1062:0 (8/9)
intron_pos 1371:2 (9/9)
BEGIN
1 MSNWDYLDEV DILPKLPPNF DELRESKKWQ ERKEALEALL KVLTDNERLS TKASYAELIG
61 HLQMVLAKDA NINCQALAAK CIGKFATGLR AKFSSFAGPL LPVIFEKMKE KKPMLREPLV
121 DCSNEVGRTM QSLETGQEDI LAALAKPNPQ IKQQTALFVA RQLDLVVPAK QPKGFIKAVV
181 PVFGKLTGDA DQDVREASLQ GLGAVQRIIG DKNVKNLLGD ASSDEGKMKK IGEYAEKSTA
241 SFAEEQAKNA PPVAPTSSTP SASAASGDPS GGTATAVVSS GAPVAEADPW DFLDAFDVLS
301 KMPDGFDTNI ESKKWQERKE ALEGLLQLIT ANPKLDPKAN YGALVERLQK VLEKDANINV
361 AALAANCITG IANGLRTKFQ PFAVSVTPII FEKFKEKKPT LRDPLVACID AVVATTNLEA
421 VGEIVLAALG KPNPSIKTQT DLFLQRCFMK LNSQTMPKKT LKTLIPSLIK HSGDSDSEVR
481 EASYAAMGAM MRAIGEKPSL QLLADIASDN LKMSKIKEFH QKALDEAGPA EIAEMVKSIH
541 KADAPPAAAP PKKTAPPKKQ PEDEEVVEEE DEPLKPPPGD KKKKVPVKEN EENEPPVVAP
601 KAELLLSDNE DKKQRIKEEK QLKLVKWNFQ APTDEHISQL QTLLGNQAKV SLMSQLFHKD
661 FKQHLAALDS LVRLADTSPR SLLSNSDLLL KWCTLRFFET NPAALIKVLE LCKVIVELIR
721 DTETPMSQEE VSAFVPYLLL KTGEAKDNMR TSVRDIVNVL SDVVGPLKMT PMLLDALKSK
781 NARQRSECLL VIEYYITNAG ISPLKSLSVE KTVAPFVGDK DVNVRNAAIN VLVACFKFEG
841 DQMWKAAGRM ADKDKSLVEE RIKRTGVKPG SGVVTSPPTG GPKILVPQQQ GSVVRRPASR
901 SRTREPEPEE VQSDTFTIRQ DTMPPKTSSR YALRDDVFSS AMGRLDGTQV ITPPQPVNGW
961 SNNTFQMKRT NSSSSISSID TSDQIQRSIN NISSSLADVA QDAMFQVTYV LNQPEQRHLV
1021 DRRADLVFRA SAAQLDLVIE EFNAGRDVSG TMDACTQMLF ILMGGVETEH GLEPLNASPD
1081 TVKAIISSVL RCIIQIGNTE SGYGMARSLN RLAMRLIYRV ELSNLLCGLI LAMTESLQMN
1141 TGITELVSKL SSKWCDELEK RRAQLRASDI VDSFNAFYVC ALTELKMDIS DSHILIVDNY
1201 LERVILQQGD VVLDAARRLS RPHMHLTSMI NKILQMMRER KIDPIMPGTL EARMPQEDEA
1261 VVVRSGVQVS IDNILRDTSM AVKHIEQLNI LIASSDRSWN EYMEYLKNNP MGELIKELVG
1321 ECSRKKRIDF NLSHVVKSSM AVFKAMAATG PVQEEGRITP TDINRMDTMI VGTPLSRGDA
1381 TITRARGNMI RPKRTTLSRD QMANIRHTLD RVKNH
//