LOCUS CAA22108.2 2106 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans 1-phosphatidylinositol 4-kinase protein.
ACCESSION BX284603-3514
PROTEIN_ID CAA22108.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 13783801)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 13783801)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 13783801)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="III"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="Y75B8A.24"
/locus_tag="CELE_Y75B8A.24"
/standard_name="Y75B8A.24"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00013557"
/db_xref="EnsemblGenomes-Tr:Y75B8A.24"
/db_xref="GOA:Q9XW63"
/db_xref="InterPro:IPR000403"
/db_xref="InterPro:IPR001263"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR015433"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR018936"
/db_xref="InterPro:IPR036940"
/db_xref="InterPro:IPR042236"
/db_xref="UniProtKB/TrEMBL:Q9XW63"
/db_xref="WormBase:WBGene00013557"
intron_pos 22:0 (1/15)
intron_pos 70:0 (2/15)
intron_pos 101:1 (3/15)
intron_pos 210:2 (4/15)
intron_pos 507:0 (5/15)
intron_pos 571:2 (6/15)
intron_pos 635:0 (7/15)
intron_pos 670:2 (8/15)
intron_pos 699:2 (9/15)
intron_pos 725:0 (10/15)
intron_pos 1660:2 (11/15)
intron_pos 1803:1 (12/15)
intron_pos 1926:0 (13/15)
intron_pos 1979:1 (14/15)
intron_pos 2076:2 (15/15)
BEGIN
1 MRDIEDFVFT NKQCLAICIA QNENTKLSQI FNLLALDDKE EQFEAQPLSH NVRCSLIAIA
61 NYLLHSHGQH ADELVPMLLR ALIALPHMKW IDDGLLNKSD KIPIQEQFSF CFNTSLSDLA
121 AHLPRFRQQI VSAQADALAC AVSSIYDVLE DQESLEHNYS HVIKLMCYAL GLLRSIGRFS
181 ADYDTPLISL IFPLPVDETK KCKGAGGADI KHRISSDEFT FDTSCDASSS DPLLLTDSKS
241 SRLIRMYNKL GASFLLNNYT GGLKLTMSSE DLEKLFDSVQ RLMDSKFLES LDEISGEIFS
301 GGSGVKRNPY KSMSEITNLC CLTLLKDVLG PYSVKNSDKN QENCGNSLQE ASPSSPISEK
361 FAKEISIFSK TALSKLDAEL SSLQHSSESS LSTEVSRQKL NIQSATVCLQ LIAWAAIDDM
421 DADAICTEII VRLFANQTQK TIISQLPLYL KAISSMATLA EKFPAVATTA VIQNLQRFLL
481 EPAPMLTKLA SDSTLERGKS AGDVIQHSKS SNNLIDAITK RKLSLDALRN SAIKAICRAL
541 KSSIRMESDS VQQCLAGLST KLFVCSNANN FVVSLVCENA IQTLGGIGVG LVDSTAVEVP
601 EMVVQIYLQR FANPPSQLDV TMIRCLAEMW IAGARSIYEN VWKLFTQICI ESSNRVYSQG
661 NNESNDQRYT HVSLAVDVAM SRMAAGVANE DDKMTLLVRL LELFVQLGIE GRRVGEKVSK
721 STVKMSTSAG NLGVLMPKIA SLLRRMQPIS EPTTKLRSLF RDFWFYCTVL GFDVESSSLW
781 PEEWYNAVCE TATKTPVLIA TENLRSELID NAAIRSDSIS PQELQEMRNT VLAELSHQAE
841 AVPLINRFDF ANCTYLLSVH RMETMRLIHA NHVDAFSSFF KYIEDKTMRK DKSGLWTCML
901 AAAPRIFLEW CEKMMKRRDN DEPTEEALVW HAQFLLFKFN HHLREVRKVA DACLSQLVKA
961 FPYLLWNTKV LTTILRLLQE LEDNLQKDPT CREPQFTIEG FGGWTIQLQD SIEGRRSVVK
1021 DFSMRVKQIL KEALRWAPAS THSNLLEYVS KFGSERDAAM QLAIDATSEG SGKSGSYLTS
1081 LYKRSNYLGQ VKGMLATTLS GDIDQVTAEN QLIDRLEKDF QRACKSGKDM EMEQAVLLLT
1141 ALFVSLRSLN ERILSLLVRT PLLNFTESTV SLCTMAWNWL LSARPEAHSL FLHEQARAFA
1201 DSSRFGLGLF EKEVVGGSPL CQKLERPPPS ANFRPHREWI EFIGERCDVA SYSSREQLDV
1261 LEMMFSQTLS AHIGTGHLHG STACSNPASL AGPSRKETIN QVTRGIEAVG VRFRLLSCVL
1321 GMVQQDACLL RPTNVLIRQR VYSCAFHYFT IAPQGPTQPE ERLREDIRLL TRFFEHLKND
1381 KHYMQKEALA KTDKNLVMSS TMSQMQTNFE KSLLISGTPV TATAAGTPNT SLMLPPSTNY
1441 ANTLTLSSQK SMAATSASIR SGKSIETKLS IEEDRRIKTW MKQRNMLMLL VANEIERLSA
1501 WLHPLALAQE DCALDSEEFL RGAFTQAKAT GGEKNIWREQ AQLAWDISPE LAIQLPSRFR
1561 GSPELVKYVD VLVRGQPEPV AHIPEALPLF LGNGSTVFET SDMSHVLTWA RCSPVMALSL
1621 LTPRIYPMHP ISMQYAVRVL RSYSADELLL YIPQIVQAVR YDTMGYISEL IIWLAGHSQL
1681 LSHQLIWNMQ TNMFTDEESK VKDPVLFEAL NDIMQKILSQ LEGAARRFHE AEFKLFHQLT
1741 AISGTIKPFP KGDARKKACL KALADVKIET ITYLPSNPEA VLLDLDYSSG TPMQSAAKAP
1801 FLARFRVKRC GVRELEHIGL QAQSEHGGKT TEADLEELKK VQDSRVCWQA AIFKVGDDVR
1861 QDMLALQLMQ LMKNVWAGLG LPVRVFPYRV VATSPGCGVI ECVPNSKSRD QLGRQTDFGL
1921 YEYFKTQYGD ESSETFQEAR RNFVRSMAAY SVFSFLLQIK DRHNGNIMID LDGHIIHIDF
1981 GFMFESSPGG NLGFEPDFKL SEEMVAIMGG KMEAAPFRQF ASLCVHAYLA VRPYHKSFVS
2041 LVSLMLDTHL PCFRGKTINQ LRARFAPEMN EKDAAKYMYS VITNCFLNIR SKMYDQLQYF
2101 QNEIPY
//