LOCUS ACV56248.1 845 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 ribonucleoside-diphosphate
reductase, alpha subunit protein.
ACCESSION CP001726-2253
PROTEIN_ID ACV56248.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_2289"
/EC_number="1.17.4.1"
/inference="protein motif:TFAM:TIGR02506"
/note="KEGG: bha:BH0501 ribonucleotide-diphosphate
reductase subunit alpha; TIGRFAM:
ribonucleoside-diphosphate reductase, alpha subunit; PFAM:
ribonucleotide reductase large subunit; ATP- cone domain
protein; Ribonucleotide reductase large subunit domain
protein"
/transl_table=11
/db_xref="InterPro:IPR000788"
/db_xref="InterPro:IPR005144"
/db_xref="InterPro:IPR013346"
/db_xref="InterPro:IPR013509"
BEGIN
1 MQISKRNGTV EAYEAGKIKR AMGAAFASVG KVLDDEEADR LIARIERAMA SAEQGEGGSV
61 SVEDVQDLVE RALMEANHYE ELKSYILYRE DRARKRVARE RLCAQLPSVP ALPGVLASVQ
121 KEFPGEEYEL AHLSAKFQSF AKPDAADGQL LAMLVKAAVE LTTQEAPRWE IIAARLLMVQ
181 FDRALAERLA ARHIETFAQK VAFLTEEGLY GDYILQHYTP AELDEAAGFI DLSRNDLFTY
241 AGLQLLLDRY VIRTHQGAPL ESPQEMFLGI ALHLAMEERA SERMGWVRRF YDMLSTLKVT
301 MATPTLSNAR KPFHQLSSCF IDTVPDSLDG IYRSIDNFAK VSKYGGGMGL YFGKVRASGS
361 AIRGFDGAAG GVIRWIRLAN DTAVAVDQLG MRQGAVAVYL DAWHRDLPEF LALRTNNGDD
421 RMKAHDVFPA VCYPDYFWQQ ARDNIEGDWY LMCPHEILTV KGYALEDCYG EEWTRKYLEC
481 VADARIKKRA IPIKDVIRLI IKSAVETGTP FTFNRDAVNR ANPNKHRGMI YCSNLCTEIA
541 QNMGAIEQLE QRIEDVDGEQ VVVTVTKPGA FVVCNLASLS LGHIDMDDPH ELAHVTESAV
601 RALDNVIDLN FFPVPYAEIN NRQYRPIGLG VSGYHHLLAK SGIRWESEEH LAFAERVFGD
661 VHYAAVRASC AIAREKGAYG FFEGSGWQTG EYFRDRGLTD GRWAELARDV AEHGLRNGYL
721 LAVAPTSSTS IIAGTTAGLD PVMNRYFLEE KKNGLMPRVA PELSMDTFWY YKNAHLIDQT
781 WSVRACGVRQ RHIDQAQSMN LYITNEYTFR RVLDLYLLAW EEGVKTIYYV RSKSLEVEEC
841 EVCSS
//