LOCUS ACV56017.1 1805 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 cell wall hydrolase/autolysin protein.
ACCESSION CP001726-2022
PROTEIN_ID ACV56017.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_2053"
/inference="protein motif:PFAM:PF01520"
/note="PFAM: cell wall hydrolase/autolysin; Spore coat
protein CotH; GBS Bsp domain protein; SMART: cell wall
hydrolase/autolysin; KEGG: bha:BH1295 hypothetical
protein"
/transl_table=11
/db_xref="InterPro:IPR002508"
/db_xref="InterPro:IPR013688"
/db_xref="InterPro:IPR014867"
BEGIN
1 MYVIIPRMQL VLLIEMSHYM RLCEKVLSVL VSFTLASSLI GVPAYADETG QGVTTSEEAT
61 AGESADTSVD GNSHFPPAES DSYSEGVDSK GLSKEDANDG LESGVFSETA SDEAKQTGAA
121 IVPDDKESVS FLYIARTEII STDSQEIAFA LSDESLVVGS ATLLLRDATS GEVFTILSDK
181 TSGNAASFLV GPGLLPLGTI MVESVSYTLQ GDDLVHEVDL SDKGYSIDVA DELDQQETVT
241 AYYQDESGAI VETDDLDAAL GEVVGTEGEM QASPFSLRSR AVGDAVASPV IALDPGHGGS
301 DPGATGNGLE EADLTWKIAV ACKDRLESQG FTVVLTRGEK DDIDGDDYLE RVERVMHYGA
361 EVYVSLHINS AVASSANGVE VYVPSKSGSE HTQVSAELAD KVIANLEALG LYSRGVKVND
421 GLAVINQSNS AGIPGILIEH GFISNAGDAT YYLSDEGCRR LGQADADAIA RQFPQSAWVD
481 YSAVYDFNYY LEYNSDVRDH YGSDDPEGAL GHFLTYGMGE GRKAIASFDV DFYRQNYDDL
541 RSVFGNDLRK YYLHYVEYGQ QEGRVADRLL DDEPAPPVSL SATPSADRST VVASLSGGLA
601 ASADSAVFAV WSERGGQDDI EWHWASRASD GSWRANISVA DHGSYGSYDV HAYATPRGSS
661 RLSLMGTTTF SIEAPSATVS TEGYDQKAGT FDVVLRDLKC ETGVSYVEFP VWSEEGGQDD
721 IVWHRAKLQS DGSYRATVSM ADHGFSTGPY DVHAYVTDKL GILSMLSSTV QEVSLPPVSL
781 SATPSADRST VVASLSGGLA ASADSAVFAV WSERGGQDDI EWHWASRASD GSWRANISVA
841 DHGSYGSYDV HAYATPRGSS RLSLMGTTTF SIEAPSATVS VSDINEYAGT FVVSLRNIVS
901 TAGVKKVEFP TWSASDQSDI AWYVATRQAD GSYQATVDIK NHLFVPGKSR NYSIHAYLTD
961 RNNIRSLIDT TDVSFAYTGE SAKYSIMGTS NMTASQMAAF YKSKKKAYPS NIYSNKGASS
1021 IDEFCAILVE EAQFEGVKPE VVFAQAMHET GWLQFGGDVK IDQCNFAGIG AVGNGEPGYT
1081 FESVRIGLRA QVQHLKGYAS KADLNGACVD PRFGYVDRGI APNVEDLGGR WATGTDYGYK
1141 LVDSIYELTS YTSTPLAITV SNITARFDAA DEAASLLVPQ FKDGVQFLFF PSGVDMSKVS
1201 LDFDTDVSVF ASVCTFGNDK GDISIEKGEP FNLGAIINAS SNEVSYIVLT VGNEGAEGKV
1261 LLGCMQDSGV MSLHLTSDDA SAFGRDYVDG SSDHSAKATG KMVLLGEGLD VRYSGKLTQI
1321 KGRGNSTWAF TDKKSYQIKL DKKASLIFPE ASGEKSKTWL LLANPFDPTL IRNNMTYSLA
1381 KELGLSGSPD SIPIDLYYDG EYRGSYLLCE KVAIGSGRVE INDLEGDIEK ANPNVDDFDD
1441 LGVSTDLNRY GNEMQWVEGL ADPDDISGGY LLELDDAYYR LEKSYFRTSD GSAFVSKSPE
1501 YLSRNQMTYI SEFVEEVIQC VKNGGVNKET GKGLFEYIDK DSFTKYFFVQ DWSKNADSFI
1561 SSTYFYKPAR EDKLYAGPIW DCDASFGIRS DVSIFSSPQG WLSRGFAKDL IEVSLFRKAL
1621 RETYEQEIRP SLYSTLLGTT NGLYVKPFGS YISQLAYSSS MNYVLWEFDD CMGTFFPAAS
1681 YWENVDNMFS WITSRSAWID DEILDESFTG SVSASTGLGY GAVYDAAYYG KNNPDVVDAC
1741 GEGNSEGIFE HFIHFGMAEG RRANETFDVF RYRTSYADLR SAFGDDLKAY YEHYIEYGQF
1801 EGRSA
//