LOCUS ACV55636.1 1078 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 carbamoyl-phosphate synthase,
large subunit protein.
ACCESSION CP001726-1641
PROTEIN_ID ACV55636.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_1670"
/inference="protein motif:TFAM:TIGR01369"
/note="TIGRFAM: carbamoyl-phosphate synthase, large
subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-
binding; ATP-dependent carboxylate-amine ligase domain
protein ATP-grasp; protein of unknown function DUF201; MGS
domain protein; Carbamoyl-phosphate synthetase large chain
oligomerisation; Carbamoyl-phosphate synthetase large
chain domain protein; KEGG: ank:AnaeK_2118
carbamoyl-phosphate synthase, large subunit"
/transl_table=11
/db_xref="InterPro:IPR003135"
/db_xref="InterPro:IPR003806"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR005480"
/db_xref="InterPro:IPR005481"
/db_xref="InterPro:IPR005483"
/db_xref="InterPro:IPR006275"
/db_xref="InterPro:IPR011607"
/db_xref="InterPro:IPR011761"
BEGIN
1 MPKREDIQTI LVIGSGPIVI GQACEFDYSG AQACKVLKAD GYRVVLVNSN PATIMTDPGL
61 ADRTYVEPIT VEFVEQVIAK ERPDALLPTL GGQTGLNTAV ELARAGILAK YGVEMIGCDL
121 EAIERGEDRK QFNECMAKLG IETSRSGYAY SIADAEDIVA ELGYPVVLRP SFTLGGAGGG
181 IAHDAAELHE IVGQGLELSP AGEVLVEESI EGWKEYEMEV MRDRAGNGII VCSIENFDAM
241 GVHTGDSITV APAQTLTDVE YQRMRAASLA ILEKIGVETG GSNVQFAVNP ENGRMIVIEM
301 NPRVSRSSAL ASKATGFPIA KAAAKLAVGY TLDEIVNDIT KATPACFEPS IDYCVVKVPR
361 FAFEKFQGTD DTLSTRMKAV GEVMAIGRTF EESLGKAMRS LENGRAGLGA DGKGGEADAS
421 DEALEDLVAR PTAERIFYLA EALRRGWTVE RASAASRVDP FFVARMADIV RVQENLRGMA
481 LDELDADAFR LLKRMGLADA QIACLTGSDE LTVRTCRKML GVRPAFKTVD TCAAEFPSAT
541 AYHYKTYDAD ETETAPKTRR RAMILGAGPN RIGQGIEFDY CCVHASYALH EVGFETIMVN
601 CNPETVSTDY DTSDKLYFEP LTFEDVMDIV DVEQPDGVVV TLGGQTPLKL ANALAAAGVP
661 IMGTSPEAID LAEDRDRFAA VLDELGIVYP AAGMASTYQE ACVVADRIGF PLLVRPSYVL
721 GGRGMGIVYD GAQLEKYMAE AAKISPDHPV YLDRFLEGAV EVDLDALCDG EQVFVGGVLE
781 HIEMAGIHSG DSACCTPPFA LSEAVQAQLR AIARRLALRL GVVGLINIQF AIKDQVIYII
841 EANPRASRTV PFTSKATGVP LAKVAARIMA GEKLADLGMP PDDRRLEHFS VKEAVMPFGR
901 FPGADTVLGP EMKSTGEVMG IARNFPAAFA KTQLAISYAL PEGGTVFVSV CDRDKRAIVP
961 IARDIARLGF RIVATGGTAR TLRAAGVECE QVRKIHEGEG NVRDMIAAGD IALMINTPFG
1021 HATRADGYEL RLEAVKHGVT HVTNLAGAQA MVAGMEAARL GGLAAVALQD LPQWELSR
//