LOCUS ACV55596.1 741 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 Polyribonucleotide nucleotidyltransferase
protein.
ACCESSION CP001726-1601
PROTEIN_ID ACV55596.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_1628"
/EC_number="2.7.7.8"
/inference="protein motif:PRIAM:2.7.7.8"
/note="KEGG: bcy:Bcer98_2459 polynucleotide
phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA
binding S1 domain protein; Polynucleotide phosphorylase,
phosphorolytic RNA- binding, bacterial/organelle-type;
Exoribonuclease, phosphorolytic domain 2; KH type 1 domain
protein; SMART: RNA binding S1 domain protein; KH domain
protein"
/transl_table=11
/db_xref="InterPro:IPR001247"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004087"
/db_xref="InterPro:IPR004088"
/db_xref="InterPro:IPR015847"
/db_xref="InterPro:IPR015848"
BEGIN
1 MKKIVESFEL YGKQYRLETG ELAKQATGSV VVTQGDTTVL VTAVISKEEK DYDFFPLTVD
61 FIEKMYAVGR IPGGYLKREA RPSDKGTLTA RMVDRPIRPG FADGFKREVH VVCTTLVVDS
121 INPPDTICVM GASAALMLGA APFDGPAACV RIGRDVETGE FIVNPTFEES ENSDLELTIA
181 GTADYISMVE AGADEISEED MLAAMTFGQE AIAAFCEAQQ RFLDRANIEP VEWPVHVADP
241 AIAERVAPFM AEMSAALRDA DKLSRMGKVE ELKARIKEEQ FSDEERAAWK GDIAAELKKL
301 EKKAMRAMVI ETGERADGRR PEDIRPLYIV PGYLPRVHGS GLFQRGQTQA LSVCTLGMLN
361 EWQRLDTIDP AEGKRYMHQY NFPPYCTGET GRMGAPKRRE IGHGALAERA LIPVLPSEDE
421 FPYAIRVVSE VLESNGSSSM ASTCGSTLAL MDAGVPIKAP VSGIAMGLIK EGDDVVILSD
481 IQGIEDFLGD MDFKVCGTAK GITALQMDNK ARGLSVDILA RALKQASEGR AYILDAMLET
541 IAAPREELSE FAPRIETIHI PVDKIRDVIG SGGKVVRGIQ EETGASINIE EDGTIHIAAI
601 EGPAGDAAKA MILGIVKEPE VGETFDGEVV GIKDFGAFVK LTPGKDGLLH ISRVANGRVG
661 KVEDVLNLGD IIKVEVLEVD PKTGKISLDR LDKPDAPESS ASNGERRERG DRNGGRDNRP
721 GRSGREGNGG GNRTPRRRHD A
//