LOCUS ACV55391.1 963 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 excinuclease ABC, A subunit protein. ACCESSION CP001726-1396 PROTEIN_ID ACV55391.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_1422" /inference="protein motif:TFAM:TIGR00630" /note="TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A" /transl_table=11 /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR004602" /db_xref="InterPro:IPR017871" BEGIN 1 MGQNAIVIKG AREHNLKDID LSIPRDELVV ITGLSGSGKS SLAFDTMYAE GQRRYVESLS 61 SYARMFLGQM SKPDLDSIDG LSPAVSIDQK TTSKNPRSTV GTTTEIYDYL RLLFARVGVP 121 HCPECGRVIK KQTTDQVTDE ILALAPDAKA IIMAPVVAGR KGEFTKLFAD LQKEGFSRVR 181 IDGEIVKLDG EPRTLNKKIK HFIDVVVDRV QLKASATSRI AEAVELATKL ADGRVLVQVL 241 GDDGKPLGEG GGRSSGATGG LGAGEHIFSL ALACPEHGHS MDELQPRDFS FNAPYGACPD 301 CLGIGSREEV DASLVAPDPS LSLNEGAIAP FKTGNYYPQV LRAVAAHLGT DADTPWEDMP 361 KKAQDGLLHG LGKDKVRVDY VTVDGRETYW YIEWEGALAA VQRRYQEAQS DAQREKLASY 421 FAIVPCPTCG GKRLKPEILA VTVNERSIHD ITEMSAADSL EFFDGLAFHG SEEHIAGPIV 481 KEIKARLKFL VDVGLDYLTL ERATATLSGG EAQRIRLATQ IGAGLMGVLY ILDEPSIGLH 541 QRDNERLIAT LERLRDLGNT VIVVEHDEDT IRSADFVVDM GPGAGEHGGE IVAIGTPDEI 601 MKAEGSLTAD YLSGRRRIEV PEKRRKPRRG SLKLTGATEN NLHNVTLEVP FGTLTVVTGV 661 SGSGKSSLVT DTLAPALANR VNHAHRRTGA YKKITGLDKI DKVINIDQSP IGRTPRSNPA 721 TYIGLWDDIR ALFASTQESK ARGYSPGRFS FNVNGGRCEA CKGDGQIKIE MHFLPDIYVP 781 CEVCGGDRYN RETLQVTYRG KNIAEVLDMT VEDALAFFEN IPGIKRKLQT LFDVGLGYIR 841 LGQPATTLSG GEAQRVKLAS ELQRRQTGKT FYILDEPTTG LHFEDVRQLL IVLQRLVDAG 901 NTVLVIEHNL DVIKCADRIV DLGPEGGERG GTVVAQGTPE EVAQVEGSYT GAFVKKMLED 961 GRL //