LOCUS ACV55160.1 954 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 molybdopterin oxidoreductase protein.
ACCESSION CP001726-1165
PROTEIN_ID ACV55160.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_1190"
/inference="protein motif:PFAM:PF00384"
/note="PFAM: molybdopterin oxidoreductase; molydopterin
dinucleotide-binding region; KEGG: ccv:CCV52592_2107
anaerobic dimethyl sulfoxide reductase subunit A"
/transl_table=11
/db_xref="InterPro:IPR006311"
/db_xref="InterPro:IPR006655"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR006657"
BEGIN
1 MSLLDKSLKR RDFLKGTAAA AAATAAFGLS GCSTGSAQAA GSDGAHVVAS DASILADAGE
61 WMPIHCHQNC NQMCLNMGYV VDGVVVRQKT DDAREDSFDC PQQRGCLRGR SLRQQVYNAD
121 RIKYPMKRKS WQPGGAENAH GELRGKDEWE RISWEEALDY IADELKRVYA EYGQDAVICN
181 GWRWAPGSAM FPVIGGAVYD TETESFGCWA FQTEALGLYS WGDHPDIMMG PDKYDLPNAD
241 TIVLYGCNPA WAQHSSMYWL NNAKESGTGF VYVGPSYNVT AAQLGARWIR VRPGTDTAFL
301 LAVIYEMIRL DGERGDIIDW DFVNERTVGF TPETMPEDAT TDENYRDYIL GAYDGTPKTP
361 EWASEICGTP VEDITWYAEL AAKDNKVIFF HSYAASRYLG AENLPQAFMT VSALGGHYGK
421 SGHGSAAIYT WDAGDSGYRL IQHAGGEYAY IDNLVGSPGA TGPNRCIEGN SWWSSLAEGK
481 YLSTSEGPYD LGSGDDPTKL RANTPTYHAA REMPVNPRLM FATCSNFMQT RGNLPTAIEV
541 MRAADTCISL EIKYSLTASF ADIILPVATH WEGNDDESWG ELCWPSPFGD GNGQKQRKDA
601 LLAWRPLVKP MYEAREEKRI CRDIVERMGF DADDAYPKSN YDQWLGYFLG MRELSEDLSR
661 WEPVITWTAD DNRKHHANYP EQQGKISFDQ FMADGSYVVR RSPDDRRNYI GYRDDKLRIG
721 ENGEVVVADT AWPRPSRSGK LEIYCQFKAD NVNRTGLNPE PIKPYANYFV PNRGYQDTFA
781 DWDAKVKGAY PLQAYTPHYM RRAHTCYDNM TWTQEAFRNP VFMNAQDAEE RGIEAGDTVV
841 CYNDFGRMLR IAQPLQGMMP GTVGIPHGVR SLFDESDPAG IVDRGGSEQM LSDGQQSNYF
901 PQVDGYNSLL IEIEKYDGEA LVEDCDRGPF LAAGIDAEGT PAYVAEGMYE GKEA
//