LOCUS ACV54843.1 2005 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 SNF2-related protein protein.
ACCESSION CP001726-848
PROTEIN_ID ACV54843.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_0870"
/inference="protein motif:PFAM:PF00176"
/note="PFAM: SNF2-related protein; helicase domain
protein; type III restriction protein res subunit; SMART:
DEAD-like helicase; helicase domain protein; KEGG:
ajs:Ajs_1578 helicase domain-containing protein"
/transl_table=11
/db_xref="InterPro:IPR000330"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR002296"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR014001"
BEGIN
1 MDSQCAGSPI ARARKNLAAL EALAAAEERG SATAAEIVAM EAYSGWGGAQ KAFSEKAEGE
61 WGEIRDRLRE LLSEDEFASQ RHTVLTAFYT PAPVIGAIYD ALREAGIGRG DNPAAILEPG
121 CGTGNFMRLA PADLALDFHG VELDPISARI AQALCPKAHI TAAGLEECRV SPASFDAAIG
181 NVPYSGDIKI DGMPIHDYFI RKSIESVRPG GIVAVLTSRY TLDKNSTATR RAMAEKAELL
241 GAVRLPAETF RRQAGTEALS DILLLRRRPE PIALSDDELP EWVETSPFED TVNINRYFNE
301 HPGRAIGDMS IVSGPMGPTL GVSFKGGATA LGDRVSDLLR DSVDRADVVE MAAAEEAAGV
361 SAVPTAPTKF EFSVAADGTI WYGTEDAVEP FTPGGGKTGP ERARAMLLLR DGARALLALE
421 RDPGADDDEV EEAIAGLSAE YDSFLERYGR INSKKNLAVF PSKGFTDHSL ALNLLSLEKV
481 DSNGEVTGKA DILKKRLVTP EAPTPEHVGN PSDALAVTID ARGGVDMDFL ADLMETDVRT
541 ALERLGDLVV SDPDDATHVM TADEYLSGDV GGKLEHVRAL LDAERGRAER QTRQAWNEHL
601 GFSVDADGLP DDARDALAQL RKTHLWESSL NPTTSRFAVD GFAHSEGLDR GARRINWDCW
661 PALIPLALEA YDGPRPIAVQ DGDDRASVST GNPLIDLLAR GLGDFYSGQI DKDVAKTPAH
721 AIKYLVCDSG LSDEELGAFF AAGGSGILNR SEYFETFRAV AGVEIEPPVR SSYGEVSVRE
781 ARIENGMRLA RALRAAPDAV EYLYRIERKQ RSEDRVTKAD LLRRDGRPSY LVDYYSGEPA
841 KLSDLATEEG LERFREYKAH FMEAAKLAVP PVDPDRVAAL ERLESRLEAV QPVKLVPGQI
901 ACQLGSSWVP ASVIRDFALE TFKIGYGHES RVRGSYQTAA QARGLEVRYS EVSGRWGVTS
961 ASGGMDESVA KKWGVGSYNC FMILTAALNG GLIQIEKDNP DYNPVAEKSK KKIPDPVATA
1021 AANAKRRELE EAFREWVWKD EGRAAMLADI YNRKLNRVAP RAYSGDYLSL PGMSPDIQLR
1081 KHQRDAVARI IQDGEGTLIA HTVGAGKTFT GIAAMHELKR LGRARKPMIV VPNNLTEQWA
1141 ADYLKLYPDA KLLVLTDAAA KSPDSVRRFW GQAASGDWDA VIVGFSRFEK LQMSYGAQKA
1201 ALTARIDELE ESRLMELEDG AGEKDFSVKQ IEGVRDKFKS KLQSLEKRNA SKTLEGATFE
1261 EVGCDAIFVD EAHYFKNLAV SGGSVPGMQT SDAAKCEDLL MKCEYLRGNG RGSNIVFATG
1321 TPVTNTMAEL YNMQRYLSPS LLASQGVSNF SAWAKTFGEV TETLEPKPEG GGLDIKRRFA
1381 RFQNLPELMS SFHCYSDIMT ADDLDLDLPE LESHAVAVPA TPEQLAEVEA LVKRGEKVHA
1441 GCDPSVDNML KITGDGRKVA LDPKLLYLED DPDMEPLSGG KVDACVQNIL DIREHTEAER
1501 GAQLVFVDSS TPASGRWNIQ DDVRRRLIEA GVPESEIACV TDAKGKSKQK EALYEKVRDG
1561 DIRILLGSTT TLGTGTNVQT RLAAIHDLDC PWRPSDLEQR LGRIVRQGNG FDHVHDLRYV
1621 STGTFDSYLY SIVERKQRFI SQVFTNKSPV RTMDDLDETV LSLAQMKQIA EGDPTVAERM
1681 DVENKIGQLK LMMASHLEGL ADVQHKIETQ YRPLVEALTS QRDMLADDEI PFAEADLVRQ
1741 QTLGSKDSFL TVGGTHIADK EEAIRALRRA AYDVRPGCQE TIGIYRGLSV VCRRQHVLDD
1801 DWLPYIGLAV DAAKHVHMSD RVFPSGEKGA FTVLTQMDRI IARDAKGPAE IELKLREAQH
1861 ALADAQKAAK EPFPKQAELD ELEQRLAVLE QERIEAELQC QREQAQRDEA EAAAIEVGVE
1921 EERETEREHE RAAAADDEAR EAARMAELRR QGLICEDSAA HNAATAVPNG VALGVPGDIA
1981 EAARCSAAAS AHDGHAEGEK RKAGM
//