LOCUS ABO50377.1 695 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 DNA topoisomerase III protein. ACCESSION CP000612-1825 PROTEIN_ID ABO50377.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_1853" /EC_number="5.99.1.2" /note="KEGG: mta:Moth_0349 DNA topoisomerase; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein" /transl_table=11 /db_xref="InterPro:IPR000380" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005738" /db_xref="InterPro:IPR006154" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" BEGIN 1 MKQLILAEKP SVGRDIVNAI GGHFEKRDGY YENSQYIISW AIGHLVELCE PEDYQPNLKK 61 WTLSALPIIP ECFKLKPNPK TIKQYKVVKQ LLNRPDVELI AGTDAGREGE LILRYIMRLS 121 GYSRPFKRLW LSETTPESIR KGLANPLPGQ AKDLLAAAAE CRSHADWLIG INATRAFTKK 181 HGDLFSIGRV QTPTLGLIVA REKEIKTFIP AHYWELYADF VTTDGQVYRG KWFKNKNKNR 241 FNQEADGISI KNKIVGQDGS VIKVEEKAVS EPPPTLFNLN DLQKEANKKF GFTASQTLEI 301 AQALYEKHKL LSYPRTEFKH LTNELAKTIP SRLSALGSVS GYSKFVAYAQ SAPKPGKRFI 361 DDAKVGDHHA LIPTNVKPTA ALSPNEAKIY NMVARRFLAM FFPAAEYKQT KIMTSVSDET 421 FLTSGKIELS PGWKEVIPPL KGENKEKSDE EVLLPPLTKG ENVAVTKAKL QQKKTEPPKR 481 YTEGTLLAVM EGAGKFVDDK ALKDAMKGHG LGTSATRAAI IERLIKVGYV ERKSKTLIPT 541 QKGETLISLV PEVVSSPQMT GEWEKALADI EAGQVNPKRF MSEIISLTKK IVNLAKEQKT 601 NGYMPESTKE VVGKCPLCGR EVVEYAKKFG CGGFREGCAF SFGKQILKKK ITVKQAKQLL 661 TNGKVLIKGF TSSKTGKKFD AALVLKDGKV SFDFS //