LOCUS ABO49880.1 947 aa PRT BCT 28-JAN-2014 DEFINITION Desulforamulus reducens MI-1 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) protein. ACCESSION CP000612-1328 PROTEIN_ID ABO49880.1 SOURCE Desulforamulus reducens MI-1 ORGANISM Desulforamulus reducens MI-1 Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulforamulus. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). FEATURES Qualifiers source /organism="Desulforamulus reducens MI-1" /mol_type="genomic DNA" /strain="MI-1" /type_material="type strain of Desulfotomaculum reducens" /db_xref="taxon:349161" protein /locus_tag="Dred_1346" /note="KEGG: gme:Gmet_0957 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein" /transl_table=11 /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" BEGIN 1 MISSTRHLFF PFNKFTVLDF GNHYFIQQLP QKCNDKKNCL MQEENKITTE VSSLENLKQE 61 EQGLKDYIDN LITLNAKLST DGTVLLINET ALRTFHMQPE EVVGKKLWDT PWWSYDADLH 121 TQLKNAVKQA ATGQTIYYET INHLVSGKKI YIYFTLNPVL NKNNEVIYLV AEGRDITKRK 181 MIEQDLISTN QELVAANEEL ISIEEELRIS NKEIYLAHER LNNILESITD AFYAVNHQWE 241 VTYVNTEAEK LLHKKRLDII GKNIWQEFSE MVHTKFYHIL HQVMSEQIYQ QFEYFFQPTG 301 KWFNIHAYPS SDGLSIYFHD ITEYKLVQEK MSLQNQYLSS LHETTLALMN RLNLDELLKA 361 IVTRSAELSG TDHGFIFLID NNNPSELVLR FGTGTYKQMV GIRLKPGEGM VGTVWQTGEP 421 LIVKDYSSWP GKSSIFSHIK IHGGIALPLK SEGKINGILG IIYIEKNQNL ESNNLSLLTG 481 FAQLASIALD NANLYQAAQQ ELAERKRIEE ILRYLAYHDS LTELPNRTLF NDRLSMALNQ 541 AHRNKNKLAV MFLDLDHFKK VNDTLGHDIG DQLLKGIAQR FSKLLRKGDT IARIGGDEFT 601 ILLHNITRAE NASIVADKII DTLANPWIIG NHEFHITTSI GIALYPDDGT DAESLLKNAD 661 AAMYQAKEMG RNNYQFYTPT MNAQTLRRFE LENNLRRALD RKEFVIYYQP QVEIHTGKIV 721 GVEALIRWQH PQRGMISPAE FIPMAEETGL IIPIGEWILR RACAQNKAWQ DRGFSPMRVT 781 VNLSARQFLQ PHLPQYISNV LEDTGLGPQW LELEITESLA MKDVAFTEKT LIELRKMGIT 841 LAIDDFGTGY SSLNYLKRLP IDILKIDRSF IHDLNTESDD VAIISAIITL GHNLKMKVVA 901 EGVETKEQLM FLRQQQCDLM QGYLFTKPLP VRELEQKYLS NNTKLFC //