LOCUS ABO49537.1 731 aa PRT BCT 28-JAN-2014
DEFINITION Desulforamulus reducens MI-1 CRISPR-associated helicase,
Cas3 family protein.
ACCESSION CP000612-985
PROTEIN_ID ABO49537.1
SOURCE Desulforamulus reducens MI-1
ORGANISM Desulforamulus reducens MI-1
Bacteria; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae;
Desulforamulus.
REFERENCE 1 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Desulfotomaculum reducens MI-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000266
Source DNA and bacteria available from Bradley M. Tebo
(tebo@ebs.ogi.edu)
Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Desulforamulus reducens MI-1"
/mol_type="genomic DNA"
/strain="MI-1"
/type_material="type strain of Desulfotomaculum reducens"
/db_xref="taxon:349161"
protein /locus_tag="Dred_1002"
/note="TIGRFAM: CRISPR-associated helicase Cas3; PFAM:
helicase domain protein; metal-dependent phosphohydrolase,
HD sub domain; KEGG: swo:Swol_0475 CRISPR-associated
helicase Cas3 domain protein"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR006474"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR014021"
BEGIN
1 MNYYAHSDKE KDKNQWHLLR DHLQGTGVTA STFAKSFGGE TIAHVAGLLH DLGKYSPEFQ
61 KRLEGHSIKV DHSTAGAIEG GKRYGLIGKI LAYIIAGHHS GLPDWGSVAD ETSLEARLKK
121 KLYDYMSFSK EINLPVEKDI TMPAIRPIVG AGFSVQFLTR LLYACLVDAD FLDTERALNP
181 EKAAARVKKY SLKKLSNNLE QYLNNLCTKA SDTAINRKRY KILANCREKA ECEPGLFTLT
241 VPTGGGKTLS SLSFALRHAI RYEKERIFYV IPFTSIIEQN AMVFKRVIGE ENVLEHHSNF
301 AYPQEDQWEM ENDLADKLAQ QKLATENWDM PVIATTNVQF FESLFAAKSS RCRKIHNLAN
361 SVIIIDEAQM IPTGFLKPCL NAVVELVANY HATIVLCTAT QPAINKFLPK EIVPVEIIDN
421 PEELYKAFKR VQVHNIGTVS DVELVEKLVS QDQVLCIVNS KKHARILYEG IRGDGTFHLS
481 TRMCPVHRTK VLEMVKERLK EGQVCRVIST QLIEAGVDID FPVVYRSMAG IDSIAQSAGR
541 CNREGLREMG QVYVFWPEKH GMPRGWLNRT ASLGSMVFKR YEDPLGLEGV KAYFTSLYDV
601 DAAELDKKCI MEDIREQERQ LRFPFRTIAE KFKLMNDNTS TIVIPWDKYC QKTLAEAESN
661 LFSGSYARKL QRYGVAVYEK EFRELLEFGA LEVVGGRFYV LKEDMFDAYY SQETGLKPFT
721 ESMFLNDTLI I
//