LOCUS       ABF08834.1              1150 aa    PRT              BCT 28-JAN-2014
DEFINITION  Cupriavidus metallidurans CH34 transcription-repair coupling
            factor protein.
ACCESSION   CP000352-2043
PROTEIN_ID  ABF08834.1
SOURCE      Cupriavidus metallidurans CH34
  ORGANISM  Cupriavidus metallidurans CH34
            Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Cupriavidus.
REFERENCE   1  (bases 1 to 3928089)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
            Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
            Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
            Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
            Taghavi,S., van der Lelie,D. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of the chromosome of Ralstonia metallidurans CH34
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3928089)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
            Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
            Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
            Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
            Taghavi,S., van der Lelie,D. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (18-APR-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE   3  (bases 1 to 3928089)
  AUTHORS   Janssen,P.J., Van Houdt,R., Moors,H., Monsieurs,P., Morin,N.,
            Benotmane,R., Lapidus,A., McCorkle,S., Monchy,S., Taghavi,S., van
            der Lelie,N., Dunn,J., Leys,N. and Mergeay,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2010) Instute of Environment, Health and Safety,
            SCK-CEN, Boeretang 200, Mol 2400, Belgium
  REMARK    Sequence update by submitter
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 2351356
            Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov)
            Contacts: John J. Dunn (jdunn@bnl.gov)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-PGF
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES             Qualifiers
     source          /organism="Cupriavidus metallidurans CH34"
                     /mol_type="genomic DNA"
                     /strain="CH34"
                     /type_material="type strain of Cupriavidus metallidurans"
                     /db_xref="taxon:266264"
     protein         /gene="mfd"
                     /locus_tag="Rmet_1955"
                     /transl_table=11
BEGIN
        1 MPDNHAAFPF ASFPLIKPGL RHAVNGLTGS ADALAVAAYA RQHRRSAPMV AVVCAHAVDA
       61 QRLAEEIPWF APELRVRLLP DWETLPYDSF SPHQDLVSER LATLHDIQGG QCDVMLVPAS
      121 TALYRLAPPA FLAAYTFFFK QGAKLDEAAL KAQFTLAGYE HVSAVMRPGE YSVRGGLIDL
      181 YPMGSALPYR IDLFGDEIET IRAFDPDSQR SLYPVKEVRL LPGREFPLDE TARTAFRGRW
      241 RELFEGDPTK SPIYKDIGNG VPSAGIEYYL PLFFEQSATL FDYLPEGTQL AFSGNVDEAI
      301 RRFWADTTQR YNFMRHDRER PLLPPADLFL SEEQFFVGAK PLARLVLQRD AAPADAPAFA
      361 GHLPDVSVNR RAEDPLVNLE SLLLNKATRV LMCADSAGRR ETLLQLFAES GLRPMIVDDF
      421 AAFLAGDSHF SIAVAPLQTG FALPSAQMAF VTEAELYAGT ARRSGRRKQE QASTVDAMVR
      481 DLAELKIGDP VVHSEHGIGR YQGLVTLDMG QGDEEFLHLD YDKGSKLYVP VHQLHVISRY
      541 SGADPETAPL HSLGTGQWDK AKRRAAQQIR DTAAELLNLY ARRALREGFA FPLQPKDYEA
      601 FAESFGFEET PDQAAAIAAV IADMTSGKPM DRLVCGDVGF GKTEVALRAA FVAVLGGKQV
      661 AMLAPTTLLA EQHFQTLSDR FAEWPVRIVE LSRFKTKKEI DAAIKQINEG TVDIVIGTHK
      721 LLSDEVKFQR LGLVIIDEEH RFGVRQKEAL KTLRAEVDVL TLTATPIPRT LGMALEGLRD
      781 FSVIATAPQK RLAIKTFVRR EEDGVIREAI LRELKRGGQV YFLHNEVETI ENKRAKLAEL
      841 VPEARIAVAH GQMHERELER VMRDFVSRRD NILLCTTIIE TGIDVPTANT ILIHRADKFG
      901 LAQLHQLRGR VGRSHHQAYA YLLVHDVEGL TRQAQRRLEA IQQMEELGSG FYLAMHDLEI
      961 RGAGEVLGDK QSGEIHEIGF QLYTDMLNAA VKSLKAGKEP DLMAPLAATT EINLGTPALL
     1021 PNDYCADVHE RLSIYKRLAN CEAGERVDDI QEELIDRFGR LPSQAQALIE THRLRIAAAP
     1081 LGVRKIDAGE ATVSMQFVPN PPIDAIRIID LVQKNRHIKL AGQDKLRIEA KMPDVATRAQ
     1141 TIKHTLRQLA
//