LOCUS ABE39851.1 1172 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 transcription-repair
coupling factor protein.
ACCESSION CP000283-2611
PROTEIN_ID ABE39851.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2622"
/transl_table=11
/db_xref="InterPro:IPR001410"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003711"
/db_xref="InterPro:IPR004576"
/db_xref="InterPro:IPR005118"
/db_xref="InterPro:IPR011545"
BEGIN
1 MKTPHRSPAE LLTPGKALTF ANVAEGAEGL IISDLARAVA ARPKPPAVSL AVICRDGPRM
61 QQLARSLEFF APDVAVMQFP AWDCQPYDRV SPHSGILAQR VTALARLSRL AGSDKPLIVL
121 TTVNAAVQRV PMREVIAGQA LSVAPGNVVP MDSIVAWLEH NGYSRASTVR EPGEYAVRGG
181 ILDLFPAGLD QPVRFDFFGD QLESIRTFDA ETQRTLHAMR GLDLVPVSEF QLISETIRRF
241 RMGYVAAFGA PDRDDQLYSA VSEGRRHPGM EHWLPLFQER MDTLFDYLPG APVAIEPQSE
301 DAARERFKQI TDYYEARREA MDQPGSGAIY KPLPPDQLYL TDSEWTARLE GASLARLTPF
361 AVPDDGGSVI DAGARAGRNF APERADTAVN VFETLVAHVQ ALQATRKKVV IALWSEGSRD
421 RMASMLKDHK LVHLTSVNSW RTVQATPRNE AMLAVVGLES GFETDAFAVI TEQDILGDRL
481 VRQRKSSKKL DNFISEVTSL ASGDIVVHVE HGIGRFIGLQ TLEVGGAPHD CVELHYANDT
541 KLFLPVENIE LLSRYGSDGT NVELDKLGGS GWQARKAKLK NRIRQIAGEL IKVAAERHLR
601 EAPKLQVEPH LYDEFCARFP YDETEDQLAA INAALGDLGR GMPMDRLVCG DVGFGKTEVA
661 LRAAFAVALD GKQVAVVVPT TLLARQHAKT FADRFRGFPV NVGQASRLVS PKELTQVKKG
721 IADGQIDIVV GTHALLGKAI KFKDLGLVVV DEEQHFGVTH KERLKQLRAE VHVLTLSATP
781 IPRTLQLAMT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVCPR
841 IDDLAEVKDF LDKHVPEMKV AVAHGQMPPT VIEDIMSAFY DGKYDILLST TIVESGLDIP
901 TANTLIIHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPS QHKITPQAER RLKVLQSLET
961 LGAGFQLASH DLDIRGAGNL LGEEQSGHIK EVGFELYQSM LEEAITNLKA GVSEPVADRW
1021 SPQITIGMPV LIPEEFVNDL SVRLSLYRRL ADLDTDEEIE NFAAELRDRF GPLPDEVRYL
1081 FKVAAIKAYC RRANVEKVDA GPKGVVITFR DNSFAQPDRL VTFIRRHGDA AKVRPDMKVV
1141 FFQVWKTPEE RLAGTTDIMK QLAELAETRK AA
//