LOCUS ABE38194.1 1033 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 DNA polymerase I protein.
ACCESSION CP000283-954
PROTEIN_ID ABE38194.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_0956"
/EC_number="2.7.7.7"
/transl_table=11
/db_xref="InterPro:IPR000513"
/db_xref="InterPro:IPR001098"
/db_xref="InterPro:IPR002298"
/db_xref="InterPro:IPR002421"
/db_xref="InterPro:IPR002562"
/db_xref="InterPro:IPR008918"
BEGIN
1 MPKSPSKAAA TPAAATSPAP IAGKAPGKGD HIFLVDGSSY IFRAYHALPP LSRKSDGLQV
61 NAVLGFCNML WKLLRDMPPD NRPTHLAIIF DKSEATFRNE MYPAYKAHRP PAPDDLIPQF
121 ALIREAVRAF DLPCLEQSGF EADDLIATYV REACEAGATA TIVSSDKDLM QLVTDCVTMY
181 DTMKDRRIGV AEVIEKFGVP PDKVVEVQAL AGDSVDNVPG VPGIGIKTAA QLITEYGDLE
241 TLLARAGEIK QPKRREALIE NAEKARISRK LVLLDDHVKL DVPLDELAVH EPDARKLISF
301 LKAMEFTTLT RRVADYAQID PSDVEAEAAL KSSPLPLAGE VGARSATGGG TAASGDLFSE
361 QVPSTQPSPA SGRGSAQQSG EGGALNAGRG RDGRPGEVLS PQILAARRAE TARKIPVDRT
421 AYKTIRTLDE LHGWIARIHD AGFVAVDAIA TSIDPMQAEL CGIALALAPN DAAYIPLGHR
481 QTGDGSGLFA AGLAPDQLGA REALDALKPL LESAGLAKIG FNIKFTAVLL AQHGITLRNI
541 DDLQLMSYAL DAGRGSHGLD ALSESNLGHT LHALGELTGS GKAKIGFDQV PIERATEYAG
601 ERADVALRLW RVLKPRLVAE RMMAVYETLE RPLVGVLARM ERRGISIDRS VLSRLSADFA
661 QTAARIEAEI RELAGEDINI GSPKQLGDIL FGKMGLPGGS KTKTGAWSTS AQVLDELAEQ
721 GHEFPRKILD WRQVSKLRST YTDALPNYVH PQTQRVHTTY ALAATTTGRL SSNEPNLQNI
781 PVRTEDGRKI RRAFIASPGY KLVSADYSQI ELRLLSEVAE VPALRKAFQD GIDIHAMTAS
841 EMFGVPVEGM PSEIRRRAKA INFGIIYGIS AFGLANQLGI PREEAGAYIK RYFERFPGIR
901 AYMDETRDFC RAHGYVETLF GRKCHYPDIK ASNPSIRAFN ERAAINARLQ GSAADIIRRA
961 MGRMEDALAE KKLSAQMLLQ VHDELIFEVP DDEVAATLPV VRHVMQDAPF PAVLLNVPLQ
1021 VDARAADNWD EAH
//